BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0095.p
         (284 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3...   343   9e-96
gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC t...   157   6e-40
gi|300312271|ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3...   154   8e-39
gi|300312608|ref|YP_003776700.1| glutathione reductase [Herbaspi...    72   4e-14

>gi|300310787|ref|YP_003774879.1| 2-oxoglutarate dehydrogenase E3
           component lipoamide dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 596

 Score =  343 bits (880), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 168/168 (100%), Positives = 168/168 (100%)

Query: 1   VIVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASV 60
           VIVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASV
Sbjct: 411 VIVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASV 470

Query: 61  IPSVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETH 120
           IPSVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETH
Sbjct: 471 IPSVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETH 530

Query: 121 RIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGM 168
           RIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGM
Sbjct: 531 RIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESLGM 578


>gi|300311771|ref|YP_003775863.1| branched-chain amino acid ABC
           transporter permease [Herbaspirillum seropedicae SmR1]
          Length = 628

 Score =  157 bits (398), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 77/86 (89%), Positives = 82/86 (95%)

Query: 164 ESLGMDVRRLQWGGFAIAGLFCGLAGVLFAFSKGSISPEVASVGRSVDGLVMVLLGGVQS 223
           ++LGMDVR LQWGGFA+AGLFCGLAGVLFAFSKGSISPEVA V RSVDGLVMVLLGGVQS
Sbjct: 511 QALGMDVRALQWGGFALAGLFCGLAGVLFAFSKGSISPEVAGVNRSVDGLVMVLLGGVQS 570

Query: 224 LLGPLLGAALFTWLQDLVARETDYWR 249
           L GPLLGA++FTWLQDLVARETDYWR
Sbjct: 571 LAGPLLGASVFTWLQDLVARETDYWR 596


>gi|300312271|ref|YP_003776363.1| 2-oxoglutarate dehydrogenase E3
           component lipoamide dehydrogenase [Herbaspirillum
           seropedicae SmR1]
          Length = 475

 Score =  154 bits (389), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 81/178 (45%), Positives = 114/178 (64%), Gaps = 5/178 (2%)

Query: 3   VSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAIAGEKSFFDASVIP 62
           + +RGFIAVD   +TN+P+++A+GD+V  PMLAHKA  EG   AE IAG+    + + IP
Sbjct: 298 LDERGFIAVDGDCKTNLPNVWAVGDVVRGPMLAHKAEEEGVAVAERIAGQHGHVNFNTIP 357

Query: 63  SVAYTDPEVAWVGVTEDEAKAKGIKIEKGHFPWAASGRAVANGRSEGFTKLLFDAETHRI 122
            V YT PE+AWVG TE + KA+G++ + G FP+ A+GRA A G + G  K L DA+T  I
Sbjct: 358 WVIYTSPEIAWVGKTEQQLKAEGVQYKAGTFPFLANGRARALGDTSGMVKFLADAKTDEI 417

Query: 123 IGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGE-----SLGMDVRRLQW 175
           +G  IVG  A ++I E  +A+E  A + DI +  H HP+L E     +L +D R L +
Sbjct: 418 LGVHIVGPMASELISEAVVAMEFRASSEDIARICHAHPSLSEATKEAALAVDKRALNF 475


>gi|300312608|ref|YP_003776700.1| glutathione reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 458

 Score = 72.4 bits (176), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/170 (30%), Positives = 86/170 (50%), Gaps = 7/170 (4%)

Query: 1   VIVSDRGFIAVDKQMRTNVPHIFAIGDLVGQPMLAHKAVHEGHVAAEAI--AGEKSFFDA 58
           V +   G I V++   ++VP I A+GD++ +  L   A+ E       +   GE+    A
Sbjct: 284 VKLKANGAIEVNQDFESSVPSILAVGDVIDRVALTPVALAEAMAVVSRLFGKGERGMSYA 343

Query: 59  SVIPSVAYTDPEVAWVGVTEDEAKAK--GIKIEKGHFPWAASGRAVANGRSEGFTKLLFD 116
           + IP+  ++ P V  VG++E+EA+ +   ++I K  F    +   ++      F KL+ D
Sbjct: 344 N-IPTAVFSHPNVGTVGLSEEEARQQFGELRIFKTDFKPLKN--TLSRNTERTFMKLVVD 400

Query: 117 AETHRIIGGGIVGTHAGDMIGEVALAIEMGADAVDIGKTIHPHPTLGESL 166
           A T R++G  +VG  AG++I   A+A++ GA       TI  HPT  E  
Sbjct: 401 ARTDRVLGVHMVGGDAGEVIQGFAVALQCGATKAQFDTTIGIHPTSAEEF 450


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.140    0.422 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 893,163
Number of extensions: 37642
Number of successful extensions: 190
Number of sequences better than 1.0e-08: 14
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 14
Length of query: 284
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 200
Effective length of database: 1,222,130
Effective search space: 244426000
Effective search space used: 244426000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)