BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0091.p
         (336 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311528|ref|YP_003775620.1| microcin C7 resistance protein ...   572   e-164

>gi|300311528|ref|YP_003775620.1| microcin C7 resistance protein
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score =  572 bits (1475), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 280/332 (84%), Positives = 298/332 (89%)

Query: 5   TAGRELLEGLVPPGTGVAIVAPCGHAGLDPAGVQRGVALLESLGCRVRNFYDHARRYQRF 64
           TAGRELL+GLVPPGTGVAIVAPCGHAG+DP  V RGVALLESLGCRVRNFYDH +RYQRF
Sbjct: 2   TAGRELLDGLVPPGTGVAIVAPCGHAGVDPERVPRGVALLESLGCRVRNFYDHQQRYQRF 61

Query: 65  GATDEQRAAQLMEAAAAPEIDVIMGLRGSYGMSRILPALDIPALAASGKLLVGYSDFTAL 124
           GATDEQRAAQLMEAAA P+++VI+GLRGSYGMSRILP LDIPALAASGKLLVGYSDFTAL
Sbjct: 62  GATDEQRAAQLMEAAADPDVEVILGLRGSYGMSRILPTLDIPALAASGKLLVGYSDFTAL 121

Query: 125 QCCLLAQSGYAGFQGPMLSGDFGAESPNWAALANLWRTLTSAQVVVHNYDGPAGADRVPN 184
           QC LLA  G  GFQGPML GDFGAE+P+W ALA  W+TLTS QV V NY GP G DR P 
Sbjct: 122 QCALLAHGGQGGFQGPMLCGDFGAETPDWQALACFWKTLTSPQVTVRNYSGPDGMDRAPI 181

Query: 185 GDRLTDPLSPVLQCAGKLWGGNLAMMAHMVGHPQFPAIDGGILFLEDVNEHPFRVERMIL 244
           GDR TDP SPV++C GKLWGGNLAMMAHMVGHPQF  ++GGILFLEDVNEHPFRVERMIL
Sbjct: 182 GDRRTDPASPVVRCEGKLWGGNLAMMAHMVGHPQFAPVEGGILFLEDVNEHPFRVERMIL 241

Query: 245 QLEQAGVLARQKAILLGDFSAYRLAEIDNGYDFTEMLAFLRQRIATPIVTGLPFGHVRDL 304
           QL QAGVLARQ+AILLGDFS YRLAEIDNGYDFT+MLAFLRQ IATPIVTGLPFGHVRDL
Sbjct: 242 QLHQAGVLARQRAILLGDFSGYRLAEIDNGYDFTQMLAFLRQHIATPIVTGLPFGHVRDL 301

Query: 305 VTLPLGAHAALDARGAAGFTLTLSDYPTLARR 336
           VTLP+GAHA LDA+GA GFTLTLSDYPTL RR
Sbjct: 302 VTLPIGAHAVLDAQGADGFTLTLSDYPTLTRR 333


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,069,921
Number of extensions: 45960
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 250
Effective length of database: 1,212,660
Effective search space: 303165000
Effective search space used: 303165000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)