BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0090.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311529|ref|YP_003775621.1| transmembrane protein [Herbaspi...   339   9e-95

>gi|300311529|ref|YP_003775621.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 195

 Score =  339 bits (869), Expect = 9e-95,   Method: Compositional matrix adjust.
 Identities = 167/191 (87%), Positives = 176/191 (92%), Gaps = 1/191 (0%)

Query: 1   MKRVPLPAAVLTLSALALPLMPAEAADTGYNVWTNEYTVSRQQLQTAIAPQFPRKMRYMD 60
           MKR   P A L LS +AL     +AAD+GYN+WTNEYTVSRQQLQ+AIAPQFPRK+RYMD
Sbjct: 6   MKRALFPVA-LCLSGVALIPALGQAADSGYNIWTNEYTVSRQQLQSAIAPQFPRKLRYMD 64

Query: 61  IFDVTFSNPRLGMLPSENRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD 120
           IFDVT SNPRLGMLP++NRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD
Sbjct: 65  IFDVTLSNPRLGMLPADNRMNTVVDAQIANPLLLQRPVNAVLTLSSAFKYDPATRSLRLD 124

Query: 121 APKVDKVDSTDLPPQYAQQLTTLGNAAADQFLRDYALYTFKPEQLQMNGKTFEPGKITVE 180
           APKVDKVDS+DLPPQYAQQLT LGNAAADQFLRDYALYTFKPEQLQMNGK FEPGKITVE
Sbjct: 125 APKVDKVDSSDLPPQYAQQLTALGNAAADQFLRDYALYTFKPEQLQMNGKRFEPGKITVE 184

Query: 181 QDAVKVEIKEK 191
           QDAVKVEIKEK
Sbjct: 185 QDAVKVEIKEK 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 487,123
Number of extensions: 17706
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)