BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0089.p (532 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbasp... 1081 0.0 gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbasp... 306 2e-84 gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbasp... 248 9e-67 gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbasp... 240 3e-64 gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC trans... 75 1e-14 >gi|300311530|ref|YP_003775622.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 532 Score = 1081 bits (2796), Expect = 0.0, Method: Compositional matrix adjust. Identities = 522/532 (98%), Positives = 526/532 (98%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSGGNVSL 60 +LSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPS GNVSL Sbjct: 1 MLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSL 60 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE Sbjct: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLE 120 Query: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHTGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 AKFAEYDGYTAEARAGELLLGVGVPIEQH GPMSNVAPGWKLRVLLAQALFSNPDILLLD Sbjct: 121 AKFAEYDGYTAEARAGELLLGVGVPIEQHNGPMSNVAPGWKLRVLLAQALFSNPDILLLD 180 Query: 181 EPTNNLDIDTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 EPTNNLDI+TIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY Sbjct: 181 EPTNNLDINTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDY 240 Query: 241 MLASSQARAQQLAVNAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS 300 MLASSQARAQQLA NAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS Sbjct: 241 MLASSQARAQQLAANAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPS 300 Query: 301 SRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL 360 SRVNPF+RFEGEKKLHRLAVETQ ITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL Sbjct: 301 SRVNPFIRFEGEKKLHRLAVETQGITKTYDRDIFKNFSIMVEAGEKIAIIGANGAGKTTL 360 Query: 361 LRSIGGDVTGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV 420 LRSIGGDVTGLHPD G VKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV Sbjct: 361 LRSIGGDVTGLHPDGGLVKWAENANVGYMPQDPTEEFAGGETLTDWMGKWTQEGDDDQAV 420 Query: 421 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN 480 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN Sbjct: 421 RGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHMDMESIESLN 480 Query: 481 IALEKYAGTLIFVSHDREFVSSLATRILEVKNGQVIDFQGGYEDYLASQGIE 532 IALEKYAGTLIFVSHDREFVSSLATRILEVK+GQVIDFQGGYEDYLASQGIE Sbjct: 481 IALEKYAGTLIFVSHDREFVSSLATRILEVKDGQVIDFQGGYEDYLASQGIE 532 >gi|300311473|ref|YP_003775565.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 660 Score = 306 bits (785), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 184/536 (34%), Positives = 284/536 (52%), Gaps = 28/536 (5%) Query: 6 NITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSGGNVSLDVNER 65 +++Q G KPL EN+ + G++ GLIGANG GKS+ +L G+L GN+ R Sbjct: 6 QVSLQRGVKPLLENVDLTLNPGDKIGLIGANGAGKSSLFAMLRGELHADQGNIDFPARWR 65 Query: 66 LGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLEAKFAE 125 + + Q+ A + ++ + G + +E A PD D A+L A+ Sbjct: 66 MAYVAQETPALDR-PAIEYAIDGDAHLRQLEAELARAEAQPDDKHDGN-HIAELHTALAD 123 Query: 126 YDGYTAEARAGELLLGVGVPIEQHTGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNN 185 D YT +RA +LLLG+G +EQ P+++ + GW++R+ LAQAL D+LLLDEPTN+ Sbjct: 124 ADAYTVRSRAEQLLLGLGFSLEQMERPVASFSGGWRMRLNLAQALMCPSDLLLLDEPTNH 183 Query: 186 LDIDTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLASS 245 LD+D I WLE+ L T++IISHDR FL+ V + +D LK Y GNY + Sbjct: 184 LDLDAIIWLEDWLKRYEGTLLIISHDRDFLDGVVNVIVHIDDRKLKRYSGNYSAF----E 239 Query: 246 QARAQQLAVNA----KAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIK-------- 293 + R+ QL + A K + + A LQ F+ RF A +KARQA SR K + K++ Sbjct: 240 RQRSAQLELMAGMIEKQQRQRAHLQSFIDRFKAKATKARQAQSRMKALSKMEELAPLRAA 299 Query: 294 ----VEDIKPSSRVNPFVRFEGEKKLHRLAVETQSITKTYDRDIFKNFSIMVEAGEKIAI 349 E +P S NP + E + +E ++ D+ I ++ G++I + Sbjct: 300 AEFSFEFREPLSAPNPLLVMEKVNAGYH--IEGKNGAPDEDKIIVHGIDFSLQNGQRIGL 357 Query: 350 IGANGAGKTTLLRSIGGDVTGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGK 409 +G NGAGK+TL++++ G++ P SG + + +GY Q E E+ W Sbjct: 358 LGVNGAGKSTLIKTVAGEID---PLSGTARLGKGLVIGYFAQHQVEMLRHDESPL-WHLT 413 Query: 410 WTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTN 469 +Q +R LG F+G S+ SGGEK R+ ++ R N+LL+DEPTN Sbjct: 414 RLAPDVREQELRNFLGSFNFNGTMATSSIAPFSGGEKARLALALIVWQRPNLLLLDEPTN 473 Query: 470 HMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVKNGQVIDFQGGYEDY 525 H+D+E+ E+L +AL ++ GTL+ VSHDR + + + L V G++ F G +DY Sbjct: 474 HLDLETREALTMALAQFEGTLVLVSHDRHLLRATTDQFLIVAEGKLQPFDGDLDDY 529 >gi|300310722|ref|YP_003774814.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 640 Score = 248 bits (633), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 167/535 (31%), Positives = 285/535 (53%), Gaps = 21/535 (3%) Query: 1 VLSTANITMQFGAKPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSGGNVSL 60 V+S ++ + FG L ++ G R GLIG NG GKS+ +KI+ G + G + + Sbjct: 3 VISLSDAQLAFGHVALLDHAEFSLETGERIGLIGRNGTGKSSLLKIIAGRSKLDDGLLVM 62 Query: 61 DVNERLGKLRQDQFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYM--KAAD 118 N ++ + Q+ EEM V D V G E+ A ++E +AI +DD + + Sbjct: 63 QQNLKIAYVDQEPHFPEEMTVFDAVASGLGELPALLAEYEAITGQFGGDNDDALLERMHQ 122 Query: 119 LEAKFAEYDGYTAEARAGELLLGVGVPIEQHTGPMSNVAPGWKLRVLLAQALFSNPDILL 178 ++ D ++ + L + + + G +S G K RV LA L NPD+LL Sbjct: 123 IQTVLDAADAWSIGNKVETTLDKLNLNRDARIGELSG---GMKKRVALACGLVGNPDVLL 179 Query: 179 LDEPTNNLDIDTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYD 238 LDEPTN+LD +I WLE +L + +++ I+HDR FL+ V T + ++D G + +PGN+ Sbjct: 180 LDEPTNHLDFGSILWLEGLLRDFKGSILFITHDRSFLDNVSTRIIELDRGKILSFPGNFT 239 Query: 239 DYMLASSQARAQQLAVNAKAKEKVAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIK 298 Y ++ A + NAK + +A+ + ++R+ +++ + R ++++ ++V+ + Sbjct: 240 TYQTRKAELLANEEVENAKFDKFLAQEEVWIRK--GVQARRTRDEGRVRRLEALRVQRSE 297 Query: 299 PSSRVNPFVRFE---GEKKLHRLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAIIGANG 354 R V+ E GE+ ++ E +++ K Y + I ++FS ++ G+K+ +IG NG Sbjct: 298 RRERQGQ-VKLEVGTGERS-GKIVAELENVNKAYGPKTIVRDFSTILMRGDKVGLIGQNG 355 Query: 355 AGKTTLLRSIGGDVTGLHPDSGEVKWAENANVGYMPQDPTEEFAGGETLTDWMGK---WT 411 AGKTTLL+ I G+ PDSG VK V Y Q + TL D + W Sbjct: 356 AGKTTLLKLILGEEA---PDSGTVKQGTKMQVAYFDQ-MRAQLNEETTLADTIAPGSDWV 411 Query: 412 QEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHNVLLMDEPTNHM 471 + + V L LF+ + + V+ LSGGE+ R++ +L NVL++DEPTN + Sbjct: 412 EVNGQRKHVMTYLSDFLFAPERARSPVRTLSGGERNRLLLARLFAKPANVLVLDEPTNDL 471 Query: 472 DMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-NGQVIDFQGGYEDY 525 D++++E L LE+Y GT+ VSHDR F+ ++ T+++ + NG ++ GGY D+ Sbjct: 472 DIDTLELLEELLEEYEGTVFLVSHDRMFLDNVVTQVIASEGNGVWREYVGGYSDW 526 >gi|300313989|ref|YP_003778081.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 555 Score = 240 bits (612), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 183/550 (33%), Positives = 284/550 (51%), Gaps = 68/550 (12%) Query: 14 KPLFENISVKFGDGNRYGLIGANGCGKSTFMKILGG-DLEPSGGNVSLDVNERLGKLRQD 72 + + ++IS+ F G + G++G NG GKST +KI+ G D E G + + N +G L Q+ Sbjct: 19 RQILKDISLSFFPGAKIGVLGLNGSGKSTLLKIMAGIDKEIEGEAIPMP-NLNIGYLPQE 77 Query: 73 QFAYEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDY----MKAADLEAKFAEYDG 128 E V V E++ A ++ DA+YA D D+ + A LEA A DG Sbjct: 78 PQLDAEKTVRQEVESALGEVFEAQAKLDAVYAAYAEEDADFDALATEQARLEAIIAAADG 137 Query: 129 YTA----EARAGELLLGVGVPIEQHTGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTN 184 + E A L L P + G +S G K RV L + L S PD+LLLDEPTN Sbjct: 138 NSLNQQLEMAADALRLP---PWDAKIGVLSG---GEKRRVALCKLLLSKPDMLLLDEPTN 191 Query: 185 NLDIDTIRWLEEVLNERNSTMIIISHDRHFLNQVCTHMADMDYGTLKIYPGNYDDYMLAS 244 +LD +++ WLE+ L T++ I+HDR+FL+ + ++D G + GNY + L Sbjct: 192 HLDAESVDWLEQFLQRFPGTVVAITHDRYFLDNAAEWILELDRGHGIPWKGNYSSW-LEQ 250 Query: 245 SQARAQQLAVNAKAKEK-VAELQDFVRRFSANKSKARQATSRAKQIDKIKVEDIKPSSRV 303 +AR +Q + A++K +A+ ++VR+ K RQA S+A+ +R Sbjct: 251 KEARLKQEEASESARQKTIAKELEWVRQ----NPKGRQAKSKARL------------ARF 294 Query: 304 NPFVRFEGEKK-------------LHRLAVETQSITKTY-DRDIFKNFSIMVEAGEKIAI 349 N +E +K+ L +E ++++K Y DR + + + + AG + I Sbjct: 295 NELSEYEYQKRNETQEIFIPVAERLGNEVIEFKNVSKGYGDRLLIDDLNFKIPAGAIVGI 354 Query: 350 IGANGAGKTTLLRSIGGDVTGLHPDSGEVKWAENANVGYMPQDPT---------EEFAGG 400 IG NGAGK+TL R + G T PDSGEV V + Q E+ +GG Sbjct: 355 IGPNGAGKSTLFRMLAGRET---PDSGEVVLGPTVKVSLVDQSREDLGNKKTVFEDVSGG 411 Query: 401 ETLTDWMGKWTQEGDDDQAVRGILGRLLFSGDDVKKSVKVLSGGEKGRMMYGKLMLGRHN 460 + +G++ + R LGR F G D +K V LSGGE+GR+ K +L N Sbjct: 412 ADILT-VGRF------EMPSRAYLGRFNFKGGDQQKIVGNLSGGERGRLHLAKTLLQGGN 464 Query: 461 VLLMDEPTNHMDMESIESLNIALEKYAGTLIFVSHDREFVSSLATRILEVK-NGQVIDFQ 519 VLL+DEP+N +D+E++ +L AL ++AGT++ +SHDR F+ +AT I+ + + QV F Sbjct: 465 VLLLDEPSNDLDVETLRALEDALLEFAGTVLVISHDRWFLDRIATHIIAFEGDSQVTFFD 524 Query: 520 GGYEDYLASQ 529 G Y++Y A + Sbjct: 525 GNYQEYEADK 534 >gi|300311361|ref|YP_003775453.1| antimicrobial peptide ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 657 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 27/210 (12%) Query: 16 LFENISVKFGDGNRYGLIGANGCGKSTFMKILGGDLEPSGGNVSLDVNERLGKLRQDQFA 75 + ++++ G ++GA+G GKST M ILG +PS G+ L GKL D+ A Sbjct: 24 VLNDVNLDIHAGELVAIVGASGSGKSTLMNILGCLDKPSAGSY-LVAGRETGKLDADELA 82 Query: 76 YEEMRVLDVVMMGHVEMWAAMSERDAIYANPDATDDDYMKAADLEAKFAEYDGYTAEARA 135 ++R E + + +R + ++ DAT + ++ + +A + RA Sbjct: 83 --QLR---------REHFGFIFQRYHLLSDLDATAN-----VEVPSVYAGLEPLQRRQRA 126 Query: 136 GELLLGVGVPIEQHTGPMSNVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDI----DTI 191 GELL +G+ H P ++ G + RV +A+AL + D++L DEPT LD + I Sbjct: 127 GELLARLGLAERSHHKP-GQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGQEVI 185 Query: 192 RWLEEVLNERNSTMIIISHDRHFLNQVCTH 221 + L+E L+ T+II++HD QV +H Sbjct: 186 KILKE-LHAEGHTIIIVTHDM----QVASH 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.134 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,620,987 Number of extensions: 68859 Number of successful extensions: 891 Number of sequences better than 1.0e-08: 49 Number of HSP's gapped: 876 Number of HSP's successfully gapped: 55 Length of query: 532 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 442 Effective length of database: 1,193,720 Effective search space: 527624240 Effective search space used: 527624240 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)