BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0086.p
         (297 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466...   560   e-161

>gi|300311781|ref|YP_003775873.1| hypothetical protein Hsero_2466
           [Herbaspirillum seropedicae SmR1]
          Length = 370

 Score =  560 bits (1443), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 265/295 (89%), Positives = 278/295 (94%)

Query: 1   VFKQCVNYWRENICNWMLDEREPHELCASCRLTRVIPNLDEGNNRVLWSRLETAKRRLLH 60
           VFKQC+NYWRENICNWMLDE+E HELCASCRLTRVIP LDEGNNRVLWSRLETAKRRLLH
Sbjct: 69  VFKQCLNYWRENICNWMLDEQETHELCASCRLTRVIPTLDEGNNRVLWSRLETAKRRLLH 128

Query: 61  SLWTLQLQPVPKMEDEEAGLAFEFLQDLPHGERVLTGHADGVITINIAEADPAYREQARE 120
           +LWTL+LQP PKMEDE++GLAFEFLQD PHGERVLTGHADGVITINIAEADPAYREQARE
Sbjct: 129 TLWTLRLQPAPKMEDEQSGLAFEFLQDQPHGERVLTGHADGVITINIAEADPAYREQARE 188

Query: 121 QMAEPYRTLLGHFRHESGHYYFDRLVAPTNWITPFREMFGDERQDYGEALKAHYENGPRP 180
           QMAEPYRTLLGHFRHESGHYYFDRLVA + W+ PFR+ FGDER+DYG AL+ HYENGPR 
Sbjct: 189 QMAEPYRTLLGHFRHESGHYYFDRLVAGSAWLEPFRQRFGDEREDYGAALQKHYENGPRA 248

Query: 181 DWEENFVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRHEGEQKLVIKAPPV 240
           DWEE FVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRH GEQKLVI APP 
Sbjct: 249 DWEEQFVSAYASSHPWEDWAETWAHYLHMFDTLETAYACGVQLRPRHAGEQKLVIPAPPT 308

Query: 241 AAGSFDELAREWFALTYVLNSLNRSIGMPDSYPFTLSTPVLQKLRFVHEVVNGGA 295
           AAGSFDELAREWFALTYVLNSLNRSIGMPDSYPFTLSTPVL KLRFVHE+V+G A
Sbjct: 309 AAGSFDELAREWFALTYVLNSLNRSIGMPDSYPFTLSTPVLGKLRFVHELVSGAA 363


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,060,023
Number of extensions: 45168
Number of successful extensions: 82
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,217,395
Effective search space: 258087740
Effective search space used: 258087740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)