BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0085.p (119 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918... 147 3e-37 gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760... 83 6e-18 gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411... 81 3e-17 gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324... 70 6e-14 gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711... 67 3e-13 >gi|300310251|ref|YP_003774343.1| hypothetical protein Hsero_0918 [Herbaspirillum seropedicae SmR1] Length = 137 Score = 147 bits (370), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 67/90 (74%), Positives = 79/90 (87%) Query: 1 MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60 M RPFI VGDKTSHGGTVISGDQ+FL+HGKAVA +GDLT+CP+CKGTF ITSGA DM + Sbjct: 1 MSRPFITVGDKTSHGGTVISGDQSFLIHGKAVASIGDLTTCPRCKGTFAITSGAEDMITN 60 Query: 61 GQAPARDGDRTACGATLIASQGVATHSEEK 90 G+APARDGDRTACGA LIA+Q + TH+ ++ Sbjct: 61 GKAPARDGDRTACGAILIATQALTTHAAQQ 90 >gi|300310095|ref|YP_003774187.1| hypothetical protein Hsero_0760 [Herbaspirillum seropedicae SmR1] Length = 85 Score = 82.8 bits (203), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 48/81 (59%), Positives = 54/81 (66%), Gaps = 1/81 (1%) Query: 1 MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60 M +P IV+GDKTSHGGTVI +V GK VARVGD SCP+ G+ I SG M Sbjct: 1 MSQPVIVLGDKTSHGGTVIQASGVTMVGGKQVARVGDKVSCPR-HGSTTIASGDPTMIID 59 Query: 61 GQAPARDGDRTACGATLIASQ 81 G ARDGD+TACGA LIASQ Sbjct: 60 GAPVARDGDKTACGAVLIASQ 80 >gi|300312708|ref|YP_003776800.1| hypothetical protein Hsero_3411 [Herbaspirillum seropedicae SmR1] Length = 87 Score = 80.9 bits (198), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 44/81 (54%), Positives = 51/81 (62%), Gaps = 2/81 (2%) Query: 2 GRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGD--MKS 59 GR I +GDKTSHGG VIS T GK VA GD+T+CP+CKG F I G G+ K Sbjct: 6 GRAVIRLGDKTSHGGEVISASDTLKAMGKGVALEGDMTTCPKCKGQFAIQPGGGNSTRKH 65 Query: 60 MGQAPARDGDRTACGATLIAS 80 G+ A GD T CGA+LIAS Sbjct: 66 HGKQVAYHGDTTTCGASLIAS 86 >gi|300313609|ref|YP_003777701.1| hypothetical protein Hsero_4324 [Herbaspirillum seropedicae SmR1] Length = 88 Score = 69.7 bits (169), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 41/87 (47%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 1 MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCP-QCKGTFPITSGAGDMKS 59 M P I +GD TSHGG VIS T +HG +ARVGDL SCP + GT PI GA Sbjct: 1 MPLPIIRLGDSTSHGGKVISASPTHTLHGIGIARVGDLVSCPREGHGTTPIIEGAPTYLI 60 Query: 60 MGQAPARDGDRTACGATLIASQGVATH 86 + A G R ACG +LI+S A++ Sbjct: 61 GDRMVALQGHRAACGCSLISSLATASY 87 >gi|300312023|ref|YP_003776115.1| hypothetical protein Hsero_2711 [Herbaspirillum seropedicae SmR1] Length = 173 Score = 67.4 bits (163), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 37/81 (45%), Positives = 45/81 (55%) Query: 1 MGRPFIVVGDKTSHGGTVISGDQTFLVHGKAVARVGDLTSCPQCKGTFPITSGAGDMKSM 60 M I GD TSHGGTV+ G +F V G A VG + CP+CKG++ I G + Sbjct: 1 MSSAIIRKGDSTSHGGTVLEGLVSFNVLGLPAALVGHMVYCPRCKGSYAIVEGVRHFRCG 60 Query: 61 GQAPARDGDRTACGATLIASQ 81 G A G +TACGA L ASQ Sbjct: 61 GNPVAVAGMKTACGAELQASQ 81 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.127 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 308,928 Number of extensions: 11212 Number of successful extensions: 51 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 38 Number of HSP's successfully gapped: 9 Length of query: 119 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 45 Effective length of database: 1,269,480 Effective search space: 57126600 Effective search space used: 57126600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 124 (52.4 bits)