BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0080.p
         (286 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311779|ref|YP_003775871.1| cytochrome o ubiquinol oxidase ...   561   e-161

>gi|300311779|ref|YP_003775871.1| cytochrome o ubiquinol oxidase
           subunit II protein [Herbaspirillum seropedicae SmR1]
          Length = 310

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 280/286 (97%), Positives = 283/286 (98%)

Query: 1   VMNPSGDIANQQARLIVISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWDHSTRL 60
           VMNPSGDIANQQARLI+ISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWDHSTRL
Sbjct: 25  VMNPSGDIANQQARLIIISTALMLLIIVPVIILTLLFAWRYRKSNTSAPYEPDWDHSTRL 84

Query: 61  ELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVALDWKWL 120
           ELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVALDWKWL
Sbjct: 85  ELVIWGAPLLIIIALGLLTWITTHTLDPYRPLSRIDAERPLSPQVKPLVVEVVALDWKWL 144

Query: 121 FIYPEQGIATVNELAAPVDVPIQFKITASNVMNSFYIPALAGQIYAMPSMETKLHAVINK 180
           FIYPEQGIATVNELAAPVDVPIQFKITAS+VMNSFYIPALAGQIYAMP METKLHAVINK
Sbjct: 145 FIYPEQGIATVNELAAPVDVPIQFKITASSVMNSFYIPALAGQIYAMPGMETKLHAVINK 204

Query: 181 AGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGAGKLDRAEYLKLEQPSERE 240
           AGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAG+GKLDRAEYLKLEQPSERE
Sbjct: 205 AGEYEGFSANYSGAGFSHMRFKFHGLDQAGFDAWVQKAKAGSGKLDRAEYLKLEQPSERE 264

Query: 241 PARLIGSVEPELFHAIVNRCVAPNTVCMDKMMATDLNVKPGQQKAE 286
           PARLIGS EP LFHAIVNRCVAPNTVCMDKMMATDLNVKPGQQKAE
Sbjct: 265 PARLIGSTEPNLFHAIVNRCVAPNTVCMDKMMATDLNVKPGQQKAE 310


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 810,808
Number of extensions: 31133
Number of successful extensions: 92
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 286
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 202
Effective length of database: 1,222,130
Effective search space: 246870260
Effective search space used: 246870260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)