BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0077.p
         (180 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311777|ref|YP_003775869.1| cytochrome o ubiquinol oxidase ...   354   2e-99
gi|300313443|ref|YP_003777535.1| cytochrome c oxidase subunit II...    89   2e-19

>gi|300311777|ref|YP_003775869.1| cytochrome o ubiquinol oxidase
           subunit III protein [Herbaspirillum seropedicae SmR1]
          Length = 208

 Score =  354 bits (909), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 176/180 (97%), Positives = 178/180 (98%)

Query: 1   LLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNTALLLLSSITYGF 60
           LLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNTALLLLSSITYGF
Sbjct: 29  LLGFWIYLMSDCLIFACLFACYAVLGRNYAGGPTGAELFDLPLVALNTALLLLSSITYGF 88

Query: 61  AMLAMQAKKQQNTIIWLIITGLLGAGFIYFELYEFLHLIHEGAGPARSGFLTSFFALVGT 120
           AMLAMQAKKQQNTI WLIITGLLGAGFIYFELYEFLHLIHEGAGP RSGFLTSFFALVGT
Sbjct: 89  AMLAMQAKKQQNTIFWLIITGLLGAGFIYFELYEFLHLIHEGAGPTRSGFLTSFFALVGT 148

Query: 121 HGLHVSFGIIWLIVLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 180
           HGLHV+FGIIWL+VLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP
Sbjct: 149 HGLHVTFGIIWLVVLLFQINKHGLTEANGRRLMCLSMFWHFLDVVWIGVFTFVYLMGVLP 208


>gi|300313443|ref|YP_003777535.1| cytochrome c oxidase subunit III
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 286

 Score = 88.6 bits (218), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 32  GPTGA-ELF----DLPLVALNTALLLLSSITYGFAMLAMQAKKQQNTIIWLIITGLLGAG 86
           GP G  E F      P+  +NT LLL S +T   +  AM+A  +  T +WL +T LLGA 
Sbjct: 136 GPAGTVENFTTMGPFPIPTINTLLLLTSGVTLTISHHAMRAGHRTQTAVWLFLTILLGAV 195

Query: 87  FIYFELYEFLHLIHEGAGPARSG-FLTSFFALVGTHGLHVSFGIIWLIVLLFQINKHGLT 145
           F+ F+ YE++H   E      SG + ++FF L G HG HV+ G I L V+L+++ +   T
Sbjct: 196 FMGFQAYEYIHAYSELNLKLSSGIYGSTFFMLTGFHGFHVTMGAIMLSVVLYRVLRGHFT 255

Query: 146 EANGRRLMCLSMFWHFLDVVWIGVFTFVY 174
             +       + +WHF+DVVW+G++  VY
Sbjct: 256 PTHHFAFEGAAWYWHFVDVVWLGLYVVVY 284


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.334    0.149    0.490 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 497,695
Number of extensions: 16642
Number of successful extensions: 79
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 78
Number of HSP's successfully gapped: 2
Length of query: 180
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 101
Effective length of database: 1,245,805
Effective search space: 125826305
Effective search space used: 125826305
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.6 bits)
S2: 127 (53.5 bits)