BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0075.p
         (291 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311775|ref|YP_003775867.1| surfeit 1 protein [Herbaspirill...   396   e-112

>gi|300311775|ref|YP_003775867.1| surfeit 1 protein [Herbaspirillum
           seropedicae SmR1]
          Length = 285

 Score =  396 bits (1018), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 228/268 (85%), Positives = 244/268 (91%), Gaps = 2/268 (0%)

Query: 1   MSPTPTDGVTQGKESGVAQAAPVSRTKASLLLLTLLAGFFFLVFAALGTWQVYRLQWKLD 60
           MS TP +GV QGKESG AQA PVSRTKASLLLLTLLAGFFFLVFAALG+WQVYRLQWKLD
Sbjct: 1   MSQTPINGVKQGKESGAAQAVPVSRTKASLLLLTLLAGFFFLVFAALGSWQVYRLQWKLD 60

Query: 61  LIAKVDARVHAAPVAPPAAQDWPNVTAERDEYKRVALSGRYLYSKTVAVQASTDLGSGAW 120
           LIAKVDARVHAAPVAPP    WP V+A+RDEYKRV L+GRYLYSKTVAVQASTDLGSGAW
Sbjct: 61  LIAKVDARVHAAPVAPPGPALWPQVSAQRDEYKRVVLTGRYLYSKTVAVQASTDLGSGAW 120

Query: 121 LLTPLQMADGSVVLINRGFVPVSPLKLADSQLADAPAGQLNEVTGLLRMSEQGGGFLRSN 180
           LLTPLQ+ADG VVL+NRGFV VSPLKLA++ LADAPAGQ  EVTGLLRMSE  GGFLRSN
Sbjct: 121 LLTPLQLADGEVVLVNRGFVGVSPLKLAEASLADAPAGQNAEVTGLLRMSEPKGGFLRSN 180

Query: 181 DAAQNRWYSRDVKVIAQARNLPAGQVAPYFVDADKASSEANAASAPDAQKPVGGLTVIAF 240
           DAAQ+RWYSRDV+ IAQA+ L +  VAPYFVDADKAS+EANAA APDAQKPVGGLTVIAF
Sbjct: 181 DAAQSRWYSRDVQAIAQAKGLTS--VAPYFVDADKASAEANAAVAPDAQKPVGGLTVIAF 238

Query: 241 HNSHLVYALTWYALALMSLGAGYWVIRD 268
           HNSHL+YALTWYALALMSLGAGYW+IRD
Sbjct: 239 HNSHLIYALTWYALALMSLGAGYWLIRD 266


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.130    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 776,312
Number of extensions: 29019
Number of successful extensions: 126
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 207
Effective length of database: 1,222,130
Effective search space: 252980910
Effective search space used: 252980910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)