BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0070.p (167 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 203 7e-54 gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC t... 95 2e-21 gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC t... 89 2e-19 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 87 5e-19 gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC t... 87 5e-19 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 203 bits (516), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 104/145 (71%), Positives = 117/145 (80%), Gaps = 3/145 (2%) Query: 2 SLLQIDGLRKSFGGVAALDGVSFTLPAGEMLALIGPNGAGKSTCFNLINGQLRPDAGRVL 61 SLLQ+ L KSFGGVAAL+ +SF LPAG+MLALIGPNGAGKSTCFNLINGQLRPD G VL Sbjct: 2 SLLQVQQLSKSFGGVAALEELSFALPAGQMLALIGPNGAGKSTCFNLINGQLRPDRGEVL 61 Query: 62 LDGEDIAGLDARRIWRRGXQKG---SAAFASLTVLENVQAALLSHRRRLWQLWRPAAACL 118 LDG+ I GLDARRIWRRG + SAAF+S+TVL++VQAALLSH RRLWQLWRPA + Sbjct: 62 LDGQSITGLDARRIWRRGVGRTFQVSAAFSSMTVLQSVQAALLSHHRRLWQLWRPADSLF 121 Query: 119 HDEAMALLAQVGMADQAARAXEAMA 143 +AM LL QVGMA QA RA +A Sbjct: 122 RQQAMELLDQVGMAAQAQRACAVLA 146 >gi|300313300|ref|YP_003777392.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 597 Score = 95.1 bits (235), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/143 (44%), Positives = 80/143 (55%), Gaps = 16/143 (11%) Query: 3 LLQIDGLRKSFGGVAALDGVSFTLPAGEMLALIGPNGAGKSTCFNLINGQLRPDAGRVLL 62 LL++D + K FGG+ A++ VSF + AGE++ LIGPNGAGKST FNL+ G L GRV Sbjct: 345 LLEVDQINKRFGGLVAVNDVSFKVKAGEIVGLIGPNGAGKSTTFNLVTGLLHASGGRVGF 404 Query: 63 DGEDIAGLDARRIWRRGXQKGSAA---FASLTVLENVQAALLSHRRR-----------LW 108 +G DIAGL AR I R G + +TVLENV AL +H R + Sbjct: 405 NGRDIAGLPARAIARLGIARTFQHVRLLPGMTVLENV--ALGAHMRSQQGFLKNTVNAML 462 Query: 109 QLWRPAAACLHDEAMALLAQVGM 131 L R L DEA L +VG+ Sbjct: 463 HLERAEEQALLDEAARALHRVGL 485 >gi|300311565|ref|YP_003775657.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 252 Score = 88.6 bits (218), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 57/138 (41%), Positives = 78/138 (56%), Gaps = 7/138 (5%) Query: 4 LQIDGLRKSFGGVAALDGVSFTLPAGEMLALIGPNGAGKSTCFNLINGQLRPDAGRVLLD 63 L + GL K+F G L GV L AGE ALIGPNGAGKS+ F+L++G+ R DAGR+ L Sbjct: 7 LSLQGLHKAFDGSPILRGVDLELRAGERCALIGPNGAGKSSLFHLVSGRYRADAGRITLH 66 Query: 64 GEDIAGLDARRIWRRGXQKG---SAAFASLTVLENVQAALLSHRRRLWQLWRPAAACLHD 120 G DI ++I R G + ++ F L+ ENV+ ALL + WR H+ Sbjct: 67 GVDITRQSPQQINRLGLARSFQITSLFPRLSAFENVRCALLWTLGYRYAFWRRMGGS-HE 125 Query: 121 ---EAMALLAQVGMADQA 135 A+ +L QVG+A +A Sbjct: 126 ASARALTVLQQVGLAARA 143 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 87.4 bits (215), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 58/140 (41%), Positives = 75/140 (53%), Gaps = 7/140 (5%) Query: 2 SLLQIDGLRKSFGGVAALDGVSFTLPAGEMLALIGPNGAGKSTCFNLINGQLRPDAGRVL 61 + L+ +GL K +G A +S T G ALIGPNGAGK+T NL+ G P +GRV Sbjct: 10 TTLRTEGLSKRWGSFVANSDISLTFAPGARHALIGPNGAGKTTFINLLTGGFAPSSGRVW 69 Query: 62 LDGEDIAGLDARRIWRRGXQKG---SAAFASLTVLENVQAALLSHRRRLWQLWRPAAAC- 117 GEDI L +RG + + FA LTVLE+V A + RR L W A Sbjct: 70 FGGEDITALPQHARVKRGMTRTFQINTLFAGLTVLESVVLA-IQERRGLQYKWYQTVASQ 128 Query: 118 --LHDEAMALLAQVGMADQA 135 + DEAMALLA + +A +A Sbjct: 129 TEVVDEAMALLASLKLAQEA 148 >gi|300313405|ref|YP_003777497.1| branched-chain amino acid ABC transporter ATP-binding protein/permease [Herbaspirillum seropedicae SmR1] Length = 596 Score = 87.4 bits (215), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 59/156 (37%), Positives = 87/156 (55%), Gaps = 16/156 (10%) Query: 3 LLQIDGLRKSFGGVAALDGVSFTLPAGEMLALIGPNGAGKSTCFNLINGQLRPDAGRVLL 62 +L ++ RK FGG+ A++ VSF++ AGE++ LIGPNGAGKST FNL+ G L +G++L Sbjct: 344 ILDVEAARKQFGGLVAVNNVSFSVKAGEIVGLIGPNGAGKSTTFNLVTGVLSVSSGKLLY 403 Query: 63 DGEDIAGLDARRIWRRGXQKG---SAAFASLTVLENVQAALLSHRR-----------RLW 108 G+ +AGL +R I RG + ++VLEN AA+ + RR L Sbjct: 404 RGQSLAGLSSRDISSRGIARTFQHVRLVPGMSVLEN--AAMGAFRRGQFAPQRGILASLL 461 Query: 109 QLWRPAAACLHDEAMALLAQVGMADQAARAXEAMAL 144 + R A + EA L +VG+ D R ++AL Sbjct: 462 RANRSEEARILSEARRQLERVGLGDLVDRPAGSLAL 497 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 503,756 Number of extensions: 19427 Number of successful extensions: 289 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 281 Number of HSP's successfully gapped: 64 Length of query: 167 Length of database: 1,619,870 Length adjustment: 79 Effective length of query: 88 Effective length of database: 1,245,805 Effective search space: 109630840 Effective search space used: 109630840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 127 (53.5 bits)