BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0067.p (110 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC t... 186 5e-49 gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC t... 101 1e-23 gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC t... 92 8e-21 gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPa... 91 3e-20 gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC t... 90 4e-20 >gi|300311770|ref|YP_003775862.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 186 bits (471), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 92/110 (83%), Positives = 100/110 (90%) Query: 1 VLAYGDIKRVELAMALSNAPRLLLMDEPTAGMAPRERQELMALTRRLVSERGLSVLFTEH 60 VLAYGDIKRVELAMALSNAPRLLLMDEPTAGMA +ERQ LMALTRRLV+ERG++VLFTEH Sbjct: 144 VLAYGDIKRVELAMALSNAPRLLLMDEPTAGMATQERQALMALTRRLVNERGIAVLFTEH 203 Query: 61 SMDVVFSFADRIIVLARGQLIAQGLPEEVRQDARVREVYFGSGASFGSPA 110 SMDVVF+ ADRI+VLARGQL+A G P VR DARVRE+YFGSGASFG A Sbjct: 204 SMDVVFAHADRILVLARGQLVADGAPAVVRADARVRELYFGSGASFGGAA 253 >gi|300310994|ref|YP_003775086.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 258 Score = 101 bits (252), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 48/101 (47%), Positives = 66/101 (65%) Query: 1 VLAYGDIKRVELAMALSNAPRLLLMDEPTAGMAPRERQELMALTRRLVSERGLSVLFTEH 60 L+YG +RVE+A + PRLLL+DEP AG+ P+E+QEL L RL E G++VL EH Sbjct: 156 TLSYGLQRRVEIARCMITKPRLLLLDEPAAGLNPQEKQELSQLIDRLRREHGVAVLLIEH 215 Query: 61 SMDVVFSFADRIIVLARGQLIAQGLPEEVRQDARVREVYFG 101 M ++ +DRI+V+ G+ I G PE+VR D RV + Y G Sbjct: 216 DMSLIMGISDRILVMEHGKPIVTGTPEQVRSDERVIKAYLG 256 >gi|300313284|ref|YP_003777376.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 92.4 bits (228), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 45/100 (45%), Positives = 68/100 (68%), Gaps = 2/100 (2%) Query: 2 LAYGDIKRVELAMALSNAPRLLLMDEPTAGMAPRERQELMALTRRLVSERGLSVLFTEHS 61 LAYG + VE+A+AL+ P++LL+DEP AG+ E +EL + +L R ++++F EH Sbjct: 155 LAYGKQRLVEIALALATQPKVLLLDEPAAGIPSAESRELFEVIAQL--PREVTIVFIEHD 212 Query: 62 MDVVFSFADRIIVLARGQLIAQGLPEEVRQDARVREVYFG 101 M +VF FA+RI VL G+++ +G P E+ D RV+EVY G Sbjct: 213 MGLVFRFAERITVLVGGKVLVEGTPAEIAADPRVKEVYLG 252 >gi|300312239|ref|YP_003776331.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 253 Score = 90.5 bits (223), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 41/101 (40%), Positives = 64/101 (63%), Gaps = 1/101 (0%) Query: 2 LAYGDIKRVELAMALSNAPRLLLMDEPTAGMAPRERQELMALTRRLVSERGLSVLFTEHS 61 L+YG+ +++E A AL+ P+LLL+DEP AGM P E+ ELM+ + +RG ++ EH Sbjct: 151 LSYGEQRKLEFARALATKPKLLLLDEPVAGMNPAEKTELMSEIVN-IKQRGFTIFMIEHD 209 Query: 62 MDVVFSFADRIIVLARGQLIAQGLPEEVRQDARVREVYFGS 102 M V +RI VL G++IA+G P++++ + V E Y G Sbjct: 210 MRFVMGLCERIAVLNFGKIIAEGTPDQIKNNQEVIEAYLGK 250 >gi|300313934|ref|YP_003778026.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 255 Score = 89.7 bits (221), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 42/101 (41%), Positives = 65/101 (64%), Gaps = 2/101 (1%) Query: 2 LAYGDIKRVELAMALSNAPRLLLMDEPTAGMAPRERQELMALTRRLVSERGLSVLFTEHS 61 L++G +R+E+ MA++ P+++ +DEPT+GM + E+ L L R +V+ EH+ Sbjct: 150 LSHGQQRRLEVGMAMAGRPKVIFLDEPTSGMGIDDIAEMKQLIHGL--RRDYTVVLIEHN 207 Query: 62 MDVVFSFADRIIVLARGQLIAQGLPEEVRQDARVREVYFGS 102 MD+V +DRI V+ GQ++AQG P E+R D RVR Y GS Sbjct: 208 MDIVMDISDRITVMQLGQILAQGKPAEIRSDERVRRAYLGS 248 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.137 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 333,896 Number of extensions: 12033 Number of successful extensions: 247 Number of sequences better than 1.0e-08: 60 Number of HSP's gapped: 250 Number of HSP's successfully gapped: 61 Length of query: 110 Length of database: 1,619,870 Length adjustment: 73 Effective length of query: 37 Effective length of database: 1,274,215 Effective search space: 47145955 Effective search space used: 47145955 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 124 (52.4 bits)