BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0065.p
         (194 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspiril...    69   2e-13

>gi|300313542|ref|YP_003777634.1| hydantoin racemase [Herbaspirillum
           seropedicae SmR1]
          Length = 244

 Score = 69.3 bits (168), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 89/187 (47%), Gaps = 8/187 (4%)

Query: 2   AGGPAIECLSLPSGPPGIQTQQDVDNVAPQLV-ALARSLRARAGAFVIACYSDPGLHAVR 60
           A G  +  +S   GP  I++  D     P L+  + R  R    A+VIAC+ DPGL A R
Sbjct: 27  AAGTEVTGVSPEMGPASIESHYDEALAVPGLLQEIERGERDGYDAYVIACFGDPGLSAAR 86

Query: 61  EAVDVPVLGIMESGVLTALTLGQRFGVIAIL--PGSIPRHLRAYGAMGVQSR--LAGELA 116
           E    PV+GI E+ +  A  +   F V+  L     +  HL     M    R   A E+A
Sbjct: 87  ELAQGPVIGIAEAAMHMASLIAPSFSVVTTLARTSGMAWHLAERYGMQRFCRNVRACEIA 146

Query: 117 IGLNVTDLADYDRTLARMCEVGLRLRDTQGADVIVMGCAGMAVYRDALQEALGIPVVEPS 176
           + L + D A   R  AR+ +   R     GA+ IV+GCAGMA    A+   +G PV++  
Sbjct: 147 V-LELEDPASDAR--ARITDECRRALAEDGAEAIVLGCAGMAELCAAIGRDIGAPVIDGV 203

Query: 177 QAAAAMA 183
            AA  +A
Sbjct: 204 TAAVKLA 210


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.138    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 634,758
Number of extensions: 25956
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 114
Effective length of database: 1,241,070
Effective search space: 141481980
Effective search space used: 141481980
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)