BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0064.p
         (80 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC t...   132   6e-33
gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t...    91   1e-20
gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPa...    86   4e-19
gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa...    86   8e-19
gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC t...    84   2e-18

>gi|300311769|ref|YP_003775861.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 233

 Score =  132 bits (331), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 70/79 (88%)

Query: 1   MSGGEQQMLTIARTLMGNPHLLLLDEPSEGVAPVIVEQMANMILQLKRRGMSILLCEQNT 60
           MSGGEQQMLTIARTLMGNP LLLLDEPSEGVAPVIVEQMA MI +LKR G++ILLCEQN 
Sbjct: 138 MSGGEQQMLTIARTLMGNPRLLLLDEPSEGVAPVIVEQMAAMIQELKRSGIAILLCEQNL 197

Query: 61  HFAGLVSDRSYTLDQGRML 79
           HFA LV DR Y LDQGR++
Sbjct: 198 HFASLVCDRGYLLDQGRIV 216


>gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 234

 Score = 91.3 bits (225), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 59/79 (74%)

Query: 1   MSGGEQQMLTIARTLMGNPHLLLLDEPSEGVAPVIVEQMANMILQLKRRGMSILLCEQNT 60
           +SGGEQQML IAR LM +P +L+LDEP EG+APVIV+++   I Q+K  GMSI+L EQN 
Sbjct: 131 LSGGEQQMLAIARALMTHPRVLMLDEPVEGLAPVIVDEIVAQIRQIKATGMSIILVEQNL 190

Query: 61  HFAGLVSDRSYTLDQGRML 79
                ++DR Y ++QGR++
Sbjct: 191 EVCTQLADRHYIVEQGRIV 209


>gi|300310684|ref|YP_003774776.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 249

 Score = 86.3 bits (212), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 55/76 (72%)

Query: 1   MSGGEQQMLTIARTLMGNPHLLLLDEPSEGVAPVIVEQMANMILQLKRRGMSILLCEQNT 60
           +SGGE+QML + R LM  P LL+LDEPS G+AP+IV ++  +I +L+RRG+SILL EQN 
Sbjct: 140 LSGGERQMLAVGRALMAKPRLLMLDEPSLGLAPLIVREIFRIIAELRRRGVSILLVEQNA 199

Query: 61  HFAGLVSDRSYTLDQG 76
             A  V+D  Y L+ G
Sbjct: 200 RAALQVADYGYVLENG 215


>gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 242

 Score = 85.5 bits (210), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/79 (51%), Positives = 57/79 (72%)

Query: 1   MSGGEQQMLTIARTLMGNPHLLLLDEPSEGVAPVIVEQMANMILQLKRRGMSILLCEQNT 60
           +SGGEQQML +AR L     LLLLDE SEG+APVIV+ +A MI  LK +G +I++ EQN 
Sbjct: 143 LSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLKAKGYTIVMVEQNF 202

Query: 61  HFAGLVSDRSYTLDQGRML 79
            FA  ++DR Y ++ G+++
Sbjct: 203 RFAAPLADRFYVMEHGQIV 221


>gi|300311566|ref|YP_003775658.1| branched-chain amino acid ABC
           transporter ATPase [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score = 84.3 bits (207), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 40/79 (50%), Positives = 58/79 (73%)

Query: 1   MSGGEQQMLTIARTLMGNPHLLLLDEPSEGVAPVIVEQMANMILQLKRRGMSILLCEQNT 60
           +SGGEQQML + R L+GNP LLL+DEP+EG+AP +VEQ+A  + +L+ RG+++LL EQ  
Sbjct: 139 LSGGEQQMLALGRALLGNPSLLLVDEPTEGLAPQMVEQVARALQELRTRGVAVLLVEQKQ 198

Query: 61  HFAGLVSDRSYTLDQGRML 79
             A  +S R Y + +G M+
Sbjct: 199 ALALELSQRVYVMGRGEMV 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 247,098
Number of extensions: 7992
Number of successful extensions: 197
Number of sequences better than 1.0e-08: 28
Number of HSP's gapped: 202
Number of HSP's successfully gapped: 28
Length of query: 80
Length of database: 1,619,870
Length adjustment: 51
Effective length of query: 29
Effective length of database: 1,378,385
Effective search space: 39973165
Effective search space used: 39973165
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 123 (52.0 bits)