BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0062.p
         (202 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312434|ref|YP_003776526.1| hypothetical protein Hsero_3134...    59   2e-10

>gi|300312434|ref|YP_003776526.1| hypothetical protein Hsero_3134
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)

Query: 22  NGQPLPDDRRACAAIGCLTVAQQHHCGIILLLRDDMPVHASAFALIGHQIEAAFNALWLW 81
            G  LP D R+  A+GC  VA +H   I LL   ++  + SAFAL+   +E+    +WL 
Sbjct: 23  TGLDLPVDERSLIALGCFDVAIEHQAAIALLCSSEL--YGSAFALLKVLVESLIRGIWLR 80

Query: 82  YCASEEELTRFLVDGSGKSMRQLVTQVDSVLAGR 115
            CA+++++ +F      +S +QLV  ++  L GR
Sbjct: 81  RCATDQQIRKFKTGDIDRSFKQLVADIEPKL-GR 113


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.134    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 613,372
Number of extensions: 23749
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 76
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 121
Effective length of database: 1,236,335
Effective search space: 149596535
Effective search space used: 149596535
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)