BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0059.p
         (386 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate (7-keto-...   511   e-146
gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase ...   133   2e-32

>gi|300311764|ref|YP_003775856.1| 8-amino-7-oxononanoate
           (7-keto-8-aminopelargonate) synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 385

 Score =  511 bits (1315), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 283/377 (75%), Positives = 314/377 (83%)

Query: 1   MQDFTRELDALASQSLLRTRRVVDGPQGPLLQVDGHDELSFCSNDYLGLANHPQLIAAAA 60
           M DF ++LD LA QSLLRTRR V   QGPLL V+    LSFCSNDYLGLANHP + AAA 
Sbjct: 1   MHDFHQQLDELARQSLLRTRRTVSSAQGPLLTVEARPYLSFCSNDYLGLANHPAITAAAV 60

Query: 61  EALQRYGVGAAASPLISGHSRAHETLEAELAAFVGMPSALVFGNGYMANLGVAAALAGKG 120
            AL +YG+GAAAS LISGHS AHETLE  LA F G+P+AL FG+GYMAN+GV  AL G G
Sbjct: 61  TALGQYGMGAAASALISGHSAAHETLERALAEFTGLPAALGFGSGYMANMGVIGALVGAG 120

Query: 121 DTVIVDRLAHASLIDGARLSGASLKVFPHNDVSRLEQVLSRCSSPRKLVLTDAVFSMDGD 180
           DTV+VDRL+HASLIDGARLSGASLKVFPHND  RL+ VL+RC S RKLV+TDAVFSMDGD
Sbjct: 121 DTVVVDRLSHASLIDGARLSGASLKVFPHNDTQRLDHVLARCGSGRKLVVTDAVFSMDGD 180

Query: 181 LAPLAELAAVCARHEAWLLVDDAHGLGVLGPQGRGSLALAGVQAPHVLLMGTLGKAAGVA 240
            APL+ELA +CARH AWLLVDDAHG GVLGPQGRGSLA AGV+APHVL MGTLGKAAGVA
Sbjct: 181 QAPLSELAEICARHGAWLLVDDAHGFGVLGPQGRGSLAHAGVRAPHVLCMGTLGKAAGVA 240

Query: 241 GAFVAGDANVLAWILQRARTYMFSTAHPPALAAATSASLRLIAREEWRRAHLQVLAKQLR 300
           GAFVAG+ ++LAWI+QRARTYMFSTAHPPALAAA +ASL +IA +EWRR HL+ L  QLR
Sbjct: 241 GAFVAGERDLLAWIMQRARTYMFSTAHPPALAAAATASLAVIAADEWRRTHLRALVAQLR 300

Query: 301 SGLAGLPWTLLPSPTAIQPLIVGDNAAARALSAALRVRGIWVPAICPPTVPKGTARLRIS 360
            GLAGL W LLPS T IQPLI+GDNA ARAL   LR +GIWVPAICPPTVP+ TARLRIS
Sbjct: 301 KGLAGLSWQLLPSQTPIQPLIIGDNARARALMQQLREQGIWVPAICPPTVPRMTARLRIS 360

Query: 361 LSALHTPADVARLVAAL 377
           LSALHT   VA+L+ AL
Sbjct: 361 LSALHTQEQVAQLIEAL 377


>gi|300311274|ref|YP_003775366.1| 5-aminolevulinic acid synthase
           [Herbaspirillum seropedicae SmR1]
          Length = 423

 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/402 (27%), Positives = 176/402 (43%), Gaps = 25/402 (6%)

Query: 4   FTRELDALASQSLLRTRRVVDGPQGPLLQVDGHDELSFCSNDYLGLANHPQLIAAAAEAL 63
           F R + +  ++  L    ++ G  G  +  +G   ++F   +YLG     +++ A  E+ 
Sbjct: 12  FQRFVASSVAEGFLHEPVIMQGMSGAEVSRNGRSYVNFSGINYLGWQQDARVLDAFVESA 71

Query: 64  QRYGVGAAASPLISGHSRAHETLEAELAAFVGMPSALVFGNGYMANLGVAAALAGK---- 119
           +RYG+    S    G    H  LE  L+   G    L F +G +AN+G   A+  K    
Sbjct: 72  RRYGLSTGGSRATQGICEPHLRLENMLSTLHGKERTLSFASGMLANIGFINAMTAKFGFS 131

Query: 120 --------GDTVIVDRLAHASLIDGAR--LSGASLKVFPHNDVSRLEQVLSRCSSPRKLV 169
                      +I DR  H SL   A     G SL  F HNDV+ L  VL++    + +V
Sbjct: 132 SRSAIDNRDAVLIFDRECHWSLWKAASHLKFGESLLAFKHNDVTDLTAVLAKLGGRKAIV 191

Query: 170 LTDAVFSMDGDLAPLAELAAVCARHEAWLLVDDAHGLGVLGPQGRGSLALAGVQAPHV-- 227
           + ++++S DG +AP+ E+  VC R +A   +DDA+G  V G   R        Q  H+  
Sbjct: 192 VFESLYSSDGSVAPIGEILDVCQRFDALSYIDDANGFMVYGSPQRPFHE----QFRHMRR 247

Query: 228 --LLMGTLGKAAGVAGAFVAGDANVLAWILQRARTYMFSTA-HPPALAAATSASLRLIAR 284
              +M +L K+ G+ G  ++G A  +      + T +F+ A  PP    A     RL A 
Sbjct: 248 ADFIMVSLSKSVGLEGGAISGSAEFIDAFEVLSGTSIFTAAIQPPTADLAVFIIERLRA- 306

Query: 285 EEWRRAHLQVLAKQLRSGLAGLPWTLLPSPTAIQPLIVGDNAAARALSAALRVRGIWVPA 344
             W        +   R  L      L  + + I  +++G +  A  +  AL  +G  VP 
Sbjct: 307 NPWIMEDYLDRSAMFRLKLQASGLRLNDTASYITSVMIGRDDKAEQVRQALEQQGFCVPI 366

Query: 345 ICPPTVPKGTARLRISLSALHTPADVARLVAALRS-LAQGES 385
              P V    A +R+ L  LHT   + R VA+L+  L QG S
Sbjct: 367 FRYPAVKPNQALMRLILHRLHTEPQIDRFVASLKDLLGQGAS 408


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,128,294
Number of extensions: 46415
Number of successful extensions: 246
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 244
Number of HSP's successfully gapped: 2
Length of query: 386
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 299
Effective length of database: 1,207,925
Effective search space: 361169575
Effective search space used: 361169575
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)