BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0056.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum...   277   4e-76

>gi|300311762|ref|YP_003775854.1| biotin synthase [Herbaspirillum
           seropedicae SmR1]
          Length = 347

 Score =  277 bits (709), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 150/247 (60%), Positives = 164/247 (66%), Gaps = 65/247 (26%)

Query: 1   MSQCPSPAAAQASATLHFHRPLAAIDSS-----------AAEQLFELPFLDLLYRAQTVH 49
           MS CPS  A Q SA LHFHRP  A +++           A   LFELPFLDLLY+AQTVH
Sbjct: 1   MSHCPSAPAGQTSAPLHFHRPANAANAAHSTRADDARRDAVAALFELPFLDLLYQAQTVH 60

Query: 50  RQHHRANEVQLSSLLSIKTGGCAEDCG--------------------------------- 76
           RQHH AN+VQLSSLLSIKTGGCAEDCG                                 
Sbjct: 61  RQHHPANQVQLSSLLSIKTGGCAEDCGYCAQSAHHKEAGVPAGKLMAVDEVVQAARAARD 120

Query: 77  -----YC----------------SQSAXKVRALGLETCMTLGMLEQAQAEALKQAGLDYY 115
                +C                ++   +VRALGLETCMTLGMLEQAQAEALK+AGLDYY
Sbjct: 121 QGATRFCMGAAWRNPKERDMPALTEMVSQVRALGLETCMTLGMLEQAQAEALKEAGLDYY 180

Query: 116 NHNLDTAPDFYGQVISTRSYQDRLDTLQRVQEAGLNVCCGGIIGMGETRAQRAGLIAQLA 175
           NHNLDTAPDFYGQVISTRSYQDRLDTL+RV  AGL+VCCGGIIGMGE+RAQRAGLIAQLA
Sbjct: 181 NHNLDTAPDFYGQVISTRSYQDRLDTLERVHLAGLSVCCGGIIGMGESRAQRAGLIAQLA 240

Query: 176 SLPVPPQ 182
           +LPVPPQ
Sbjct: 241 ALPVPPQ 247


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 517,392
Number of extensions: 17997
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 2
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)