BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0055.p (212 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311761|ref|YP_003775853.1| GntR family transcription regul... 367 e-103 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 65 6e-12 gi|300312737|ref|YP_003776829.1| transcription regulator protein... 59 4e-10 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 59 4e-10 >gi|300311761|ref|YP_003775853.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 213 Score = 367 bits (941), Expect = e-103, Method: Compositional matrix adjust. Identities = 186/204 (91%), Positives = 191/204 (93%) Query: 9 STVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR 68 STV+RIAEVLR RIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR Sbjct: 10 STVDRIAEVLRLRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRR 69 Query: 69 GVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEWDA 128 GVRVT VDRA VKENAEMRGSLEILALRHS RKFG EHIARLE A ACA A SL+EWDA Sbjct: 70 GVRVTMVDRATVKENAEMRGSLEILALRHSARKFGAEHIARLEQAHAACAAAGSLVEWDA 129 Query: 129 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHRLIIEALRDK 188 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDH LIIEAL+++ Sbjct: 130 ANNLFHDILSSECGMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPRSDHDHALIIEALKER 189 Query: 189 KTDRAVQLLSMHIGTMERVGFVAA 212 K DRAVQLLSMHIGTMERVGFVA Sbjct: 190 KIDRAVQLLSMHIGTMERVGFVAG 213 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 64.7 bits (156), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 101/200 (50%), Gaps = 14/200 (7%) Query: 12 ERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLPRRGVR 71 E++ EVLR R++ G+ G L+++ +A+E S PVR A R+L +GL +G+ Sbjct: 6 EKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIH 65 Query: 72 VTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAA------SLIE 125 V ++E ++R LE A + + + +A L + E AQA S+ + Sbjct: 66 VAAWSDWDIEETFQLRMLLEPYAASLAAERGDEKMLALLRESNEKMAQAIKSGGLHSVEK 125 Query: 126 WDAANNLFHDILSSECGMPRLLAVLKQL----QLTNSRYLFSTGFKRGWQPRSDHDHRLI 181 AAN++FH + PRL A+L+ + + S +L +++ +S H H+ + Sbjct: 126 IQAANSIFHRTILEYSASPRLRAMLETIIDMPIIVRSFHL----YEKSELEQSLHHHQDL 181 Query: 182 IEALRDKKTDRAVQLLSMHI 201 + A++ + + A Q++ +H+ Sbjct: 182 LLAMQARDAELARQVMQLHL 201 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 39/108 (36%), Positives = 59/108 (54%), Gaps = 3/108 (2%) Query: 6 EHPSTVERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTL 65 +H + ER+ + L I G++ G L +A +S +PVREA RQL AEG + L Sbjct: 16 QHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALEIL 75 Query: 66 PRRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKF---GPEHIARL 110 P R +RV + + +E ++R +LE LA+ H+ R G E +ARL Sbjct: 76 PNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGLEQVARL 123 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 58.5 bits (140), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 58/208 (27%), Positives = 92/208 (44%), Gaps = 24/208 (11%) Query: 8 PST-VERIAEVLRTRIIRGEIAGGAALRQDHVAQEFQSSHVPVREAFRQLEAEGLVLTLP 66 P T E + E + I +++ G L + +A+EF S P+REA QL + G+V P Sbjct: 4 PKTRAEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRP 63 Query: 67 RRGVRVTQVDRAAVKENAEMRGSLEILALRHSIRKFGPEHIARLEAAQEACAQAASLIEW 126 RRG V ++ + E E+ E + R + R+ P A L AA +AC A + Sbjct: 64 RRGAIVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQAARDANDP 123 Query: 127 DAA---NNLFHD---------ILSSEC-GMPRLLAVLKQLQLTNSRYLFSTGFKRGWQPR 173 DA N FHD L+ + + R L ++LQL R + F Sbjct: 124 DAYFYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQL-RVRDRLKSSFD------ 176 Query: 174 SDHDHRLIIEALRDKKTDRAVQLLSMHI 201 +H+ +++A+ ++ V LL HI Sbjct: 177 ---EHQAVVDAIISGDAEKTVDLLREHI 201 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.133 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 577,273 Number of extensions: 20035 Number of successful extensions: 82 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 80 Number of HSP's successfully gapped: 7 Length of query: 212 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 131 Effective length of database: 1,236,335 Effective search space: 161959885 Effective search space used: 161959885 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)