BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0052.p (470 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311757|ref|YP_003775849.1| transcription regulator protein... 684 0.0 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 103 3e-23 gi|300311074|ref|YP_003775166.1| transcription regulator protein... 93 5e-20 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 87 4e-18 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 76 5e-15 >gi|300311757|ref|YP_003775849.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 441 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 356/441 (80%), Positives = 386/441 (87%), Gaps = 5/441 (1%) Query: 35 LEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEARRRQLLEGRGAAGSFVAAPK 94 +EQAI+DERL+PGDRLPPQR LA+ L VDLTTVTRAYGEARRR LLE RG+AG+FVAAPK Sbjct: 1 MEQAISDERLRPGDRLPPQRQLAEYLQVDLTTVTRAYGEARRRHLLEARGSAGTFVAAPK 60 Query: 95 VDLSQVIDLSMNIPPPPAGIDLDDLLRQGVSQVLMHSDVDLLMTYHLGGGSSADRAAGAM 154 VDLSQ+IDLSMNIPPPPAGIDL+DLLRQG+SQVL+HSD DLLMTYHLGGGSSADRAAGAM Sbjct: 61 VDLSQLIDLSMNIPPPPAGIDLNDLLRQGMSQVLIHSDADLLMTYHLGGGSSADRAAGAM 120 Query: 155 WLQDMLGPVEDERVLACPGAQSALAALLLSQTGPGETVLAEPLAYPGLLAAAAQLGRRVV 214 W+Q MLGPV++ RVLACPGAQSALAAL+LSQT PGE +LAEPLAYPGLL AA LGRRV+ Sbjct: 121 WMQAMLGPVDEARVLACPGAQSALAALVLSQTRPGEVILAEPLAYPGLLTVAAHLGRRVM 180 Query: 215 AVGVDHEGMRPDLLTTMVRKYGARLVYLNPTLQNPTTRTMPAARRAEIASVATRLDLRII 274 AV VD EGMRPDLL TM R++ ARLVYLNPTLQNPTTRTMPA RRAEIA++ATRLDLRII Sbjct: 181 AVDVDDEGMRPDLLMTMARRHQARLVYLNPTLQNPTTRTMPATRRAEIAALATRLDLRII 240 Query: 275 EDDPYWRFAAHAPRPLAYYAPRHVFYVSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRS 334 EDDPYWRFAAHAPRPLA+YAP HVFYVSTL+KCLLPGLRTAYVL PE QAQ+EVL ALRS Sbjct: 241 EDDPYWRFAAHAPRPLAHYAPGHVFYVSTLSKCLLPGLRTAYVLMPERQAQEEVLGALRS 300 Query: 335 FVLMSTPLTTALSTQWIHDGTAAMLTEGIRQEAWARQALALRTLGEEGPADSGGIHLWKA 394 FVLMSTPL TALSTQWIHDGTAA L EGIR EAWAR LALRTLG G + GGIHLWKA Sbjct: 301 FVLMSTPLMTALSTQWIHDGTAATLLEGIRSEAWARHELALRTLGGAGLSAGGGIHLWKA 360 Query: 395 LPEHWKGQDFVRKAREAGLNVVAQDSFQA---GDGEPARSG--APHIRLSLGRSRSRFEL 449 LP HW+GQ+FV KAR+AGLNVV+Q SF G A SG IR+SLGRSRSRFEL Sbjct: 361 LPAHWQGQEFVLKARQAGLNVVSQSSFAVPPEGREPGADSGGQGACIRISLGRSRSRFEL 420 Query: 450 VHALRRLMELAHRRSLRETVV 470 V+ALRRLMELA RRS RE VV Sbjct: 421 VNALRRLMELAQRRSPREVVV 441 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 103 bits (256), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 80/256 (31%), Positives = 119/256 (46%), Gaps = 11/256 (4%) Query: 163 VEDERVLACPGAQSALAALLLSQTGPGETVLAEPLAYPGLLAAAAQLGRRVVAVGVDHEG 222 + E+VL G+Q L L G VL E +Y G L A A G + +V D G Sbjct: 97 ISAEQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDEFG 156 Query: 223 MRPDLLTTMVRKYGARLVYLNPTLQNPTTRTMPAARRAEIASVATRLDLRIIEDDPYWRF 282 ++P+ + + GAR++Y P QNPT RT+P RR ++ RL L +IEDDPY Sbjct: 157 LQPETIEAIAG--GARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGAL 214 Query: 283 A-AHAPRP-LAYYAPRHVFYVSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRSFVLMST 340 + +AP P + P V Y+ + +K L PG+R YV+ P ++ A ++ L + Sbjct: 215 SYQNAPLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAPRPLIL-KMEQAKQATDLHTA 273 Query: 341 PLTTALSTQWIHDGTAAMLTEGIRQEAWARQALALRTLGEEGPADS------GGIHLWKA 394 LT + + I DG IR+ + L L + PA GG+ +W Sbjct: 274 QLTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVT 333 Query: 395 LPEHWKGQDFVRKARE 410 LPEH + +A E Sbjct: 334 LPEHIDAGALLNEAVE 349 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 92.8 bits (229), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 124/480 (25%), Positives = 191/480 (39%), Gaps = 53/480 (11%) Query: 26 PRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEARRRQLLEGRGA 85 P Y ++ + AI L GDR+P R L + V L+T + LE R Sbjct: 41 PLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRHMEEGGWLEARPR 100 Query: 86 AGSFVAAPK---------------VDLSQVIDL----SMNIPPPPAG---IDLDDL---- 119 +G FV P+ +D Q + + S I AG IDL + Sbjct: 101 SGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGAPHIDLSGMTCAP 160 Query: 120 -------LRQGVSQVLMHSDVDLLMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLACP 172 L+Q + L +LL + G++ R A A + ++ E V+ Sbjct: 161 QLYAVETLKQAAMRALRERP-ELLTSAMPHNGNATFRQAVARRALNAGMRIDTEEVVVTH 219 Query: 173 GAQSALAALLLSQTGPGETVLAEPLAYPGLLAAAAQLGRRVVAVGVD-HEGMRPDLLTTM 231 G AL + + GPG+T+ E Y GLL A LG + + + H G+ + L Sbjct: 220 GCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPHTGISVEALELA 279 Query: 232 VRKYGA-RLVYLNPTLQNPTTRTMPAARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPL 290 VR YG + V + P LQNP MP + ++ + +L L +IEDD Y A + P Sbjct: 280 VRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAYTELADGSVTPS 339 Query: 291 AYYA---PRHVFYVSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRSFVLMSTPLTTALS 347 + + +V Y ++L K L PG+R ++ G+ + V + + T + Sbjct: 340 SLKSRDRNGNVIYCASLNKVLAPGMRLGWM--NGGRWHERVKMLKFTHTRANEEWTQVTA 397 Query: 348 TQWI----HDGTAAMLTEGIRQ--EAWARQALALRTLGEEGPADSGGIHLWKALPEHWKG 401 +I +D L + ++Q E A A G +GG+ LW LP Sbjct: 398 ADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLWVELPVQVCS 457 Query: 402 QDFVRKAREAGLNVVAQDSFQAGDGEPARSGAPHIRLSLGRSRSRFELVHALRRLMELAH 461 Q +A G+ V F +R G +R+ G +R EL ALRRL L H Sbjct: 458 QQLFERALAEGVGVSPGAIF----SNSSRYGH-FVRICCGHPFNR-ELDQALRRLGGLVH 511 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 86.7 bits (213), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 107/435 (24%), Positives = 176/435 (40%), Gaps = 56/435 (12%) Query: 30 QIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEARRRQLLEGRGAAGSF 89 Q+ L I L+ G+RLP R A D+ +TV AY + R +L+ R AG F Sbjct: 24 QVANGLAGLIETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGAGFF 83 Query: 90 VAAPKVDLSQVIDLSMNIPPPPAGIDLDDLLRQGVS--------------------QVLM 129 VAA Q ++ +PP P ID LL + + + L Sbjct: 84 VAARA---GQSGQHAVFVPPEPV-IDSAWLLSEMFADERVPIKAGCGWLPGKWLNDEGLH 139 Query: 130 HSDVDLLMT---YHLGGGSSADRAAGAMWLQDMLG----PVEDERVLACPGAQSALAALL 182 ++ ++ + +G G A + LG + E+VL GA AL ++ Sbjct: 140 QAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVI 199 Query: 183 LSQTGPGETVLAEPLAYPGLLAAAAQLGRRVVAVGVDHEGMRPDLLTTMVRKYGARLVYL 242 + T PG+TVL + Y L+A G V+ V G+ D+L T+ R + ++ + Sbjct: 200 RTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDVLETLARTHHPKMFFT 259 Query: 243 NPTLQNPTTRTMPAARRAEIASVATRLDLRIIEDDPYWRFAAHAPRPL--AYYAPRHVFY 300 LQNPT + A + A R ++EDD + R A P+ A + V Y Sbjct: 260 TSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIF-RELGQATDPMLAALDGLQRVIY 318 Query: 301 VSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRSFVLMSTPLTTALSTQWIHDGTAAMLT 360 V + +K + P LR Y+ Q E+ + ++ T + ++ + +H+ +LT Sbjct: 319 VGSYSKTIAPSLRVGYI-----ACQRELARQIVHTKMVLTLTNSEINERLVHN----VLT 369 Query: 361 EG--------IRQEAWARQALALRTLGEEG----PADSGGIHLWKALPE-HWKGQDFVRK 407 EG + + QA L E G A GG+ W + ++ + Sbjct: 370 EGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFSWATIEGCELSAREIADR 429 Query: 408 AREAGLNVVAQDSFQ 422 AR+ G+ + D F Sbjct: 430 ARQKGIWLAPGDFFH 444 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 100/446 (22%), Positives = 171/446 (38%), Gaps = 50/446 (11%) Query: 26 PRYLQIVGFLEQAIADERLKPGDRLPPQRMLADRLDVDLTTVTRAYGEARRRQLLEGRGA 85 P Y Q L +I D L+PG+R+ R+ + + V +TTV RAY R ++E + Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 86 AGSFV-----AAPK-------------------VDLSQVI-----------DLSMNIPPP 110 +G FV A PK VD+S+++ + + P P Sbjct: 65 SGYFVREQPEAPPKPALRTTSREDHPAWQESTEVDVSRLVLATLKTIQQDGTVPLGSPYP 124 Query: 111 PAGIDLDDLLRQGVSQVLMHSDVDLLMTYHLGGGSSADRAAGAMWLQDMLGPVEDERVLA 170 + L Q ++ H+ + G R +L++ L V+ E ++ Sbjct: 125 NPALFPSHRLAQYAGRIARHASQSSVFDDLPPGHPELLRQIARRYLENGLK-VDPEEIVI 183 Query: 171 CPGAQSALAALLLSQTGPGETVLAEPLAYPGLLAAAAQLGRRVVAVGVD-HEGMRPDLLT 229 GA A+ L + PG+T+ E + +L A +LG R + + D G+ L Sbjct: 184 TVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGIDVGALE 243 Query: 230 TMVRKYGARLVYLNPTLQNPTTRTMPAARRAEIASVATRLDLRIIEDDPY---WRFAAHA 286 ++ + P QNP MP + + + +A + + +IE+ Y + AH Sbjct: 244 ERMKTQAIAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSELYYGNAHP 303 Query: 287 PRPLAYYAPRHVFYVSTLAKCLLPGLRTAYVLTPEGQAQDEVLAALRSFVLMSTPLTTAL 346 Y V + S+ +K L R + + +AQ E L L + + P A+ Sbjct: 304 SSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPTAP-QRAI 362 Query: 347 STQWIHDGTAAMLTEGIRQEAWARQALALRTL-------GEEGPADSGGIHLWKALPEHW 399 + G L R A+A+Q +R G + GG LW LP+ Sbjct: 363 AEYLTQGGYERHLRRVRR--AFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVELPQGV 420 Query: 400 KGQDFVRKAREAGLNVVAQDSFQAGD 425 + R++ G+ V F A + Sbjct: 421 DAMELYRRSLALGITVAPGRIFAATN 446 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,457,097 Number of extensions: 61113 Number of successful extensions: 208 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 202 Number of HSP's successfully gapped: 9 Length of query: 470 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 381 Effective length of database: 1,198,455 Effective search space: 456611355 Effective search space used: 456611355 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)