BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0050.p
         (269 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311756|ref|YP_003775848.1| lipoprotein [Herbaspirillum ser...   305   2e-84

>gi|300311756|ref|YP_003775848.1| lipoprotein [Herbaspirillum
           seropedicae SmR1]
          Length = 265

 Score =  305 bits (782), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 164/276 (59%), Positives = 194/276 (70%), Gaps = 18/276 (6%)

Query: 1   MKTLPLILLLSSASLLGALELPSARAASFDCSKAGSANEKTICRDAELSALDDQLGHAYR 60
           M+TL     L + + L AL   S RAASFDC+KAGS+NEK IC DA+LSALDD+LG  +R
Sbjct: 1   MQTLARYSALFTFTALSALAWHSTRAASFDCAKAGSSNEKMICADAQLSALDDRLGALFR 60

Query: 61  RARQAAADQRAFRTASDAQWRWREDNCRDRACLLAWYQRRQTELEVQAAPAIAAALLTAK 120
           +AR +A+D+RA R  +D  WRWRE +C DR+CLLAWYQRR  EL+ Q             
Sbjct: 61  QARASASDKRALRADADQHWRWREQHCHDRSCLLAWYQRRSIELQAQ----------ANA 110

Query: 121 GNATSPAPALVAVPPAQAPLAA--PAA-----PGLRLGLDARQIDHLAPAGSTPWPHYAR 173
            +A+ P PAL    P  A LA   P A       L+LGL+  Q+  +AP G++PWPHY R
Sbjct: 111 ASASDPVPALAHRAPKDAALAVNRPEAAVLTQSPLQLGLNPSQLAAIAPPGASPWPHYVR 170

Query: 174 AERGQYFYRDPEAGETQPLVAVRYYGIENGQYILEAVRGQTVLRYTCSADCRYIAQLALP 233
            ERGQYFY DP+  E Q LV VRYYG+E+GQYILEAVRGQTVLRYTCS DC YI QL+LP
Sbjct: 171 VERGQYFYEDPQTPERQ-LVGVRYYGMEHGQYILEAVRGQTVLRYTCSDDCSYIGQLSLP 229

Query: 234 GDVEKDTVIVSNDRASLPGLIVSDAVNGLLAPVQSR 269
           GDVEKDTVIVSNDR SLP LIVSDA+NGLLAP  +R
Sbjct: 230 GDVEKDTVIVSNDRHSLPALIVSDAMNGLLAPSMTR 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 600,350
Number of extensions: 20436
Number of successful extensions: 77
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 185
Effective length of database: 1,222,130
Effective search space: 226094050
Effective search space used: 226094050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)