BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0045.p (561 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 432 e-122 gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis tra... 273 3e-74 gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 239 3e-64 gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 238 1e-63 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 238 1e-63 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 432 bits (1110), Expect = e-122, Method: Compositional matrix adjust. Identities = 231/547 (42%), Positives = 361/547 (65%), Gaps = 2/547 (0%) Query: 4 LSVVVALLLALLIALSVAASEAEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVAT 63 L+ V+ +L+ L++ ++A + R+ A+E R + L ELRQ +DDL+RLAR++V T Sbjct: 18 LTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATELRQSSDDLTRLARTYVVT 77 Query: 64 GEYQAERQYQAIAEIRDGRRPRPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGF 123 G+ E+QY+AI +IR+G++ RPEHY RIYWD V ADG+ PRPDS V L +LM+ AGF Sbjct: 78 GDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRPDSNQHVALTDLMRAAGF 137 Query: 124 SRDEMAKVEEVRSRSGAVLAIELRAMELVRRHTRDRVLIDAALREDP-LQQARRLLHDPR 182 + EM K+EE ++ S A++ E+ AM +V+ D + R DP L QAR L+H+ Sbjct: 138 TAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYAD-AQGNFTKRADPDLAQARELMHNHA 196 Query: 183 YELARAAMMRPLEALQAMLDTRTRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLY 242 Y + +A +MRP++ A+LD RT + AR + T+ ++ + L+V+ ++ +Y Sbjct: 197 YHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSLIAIALVVLACTLMLVY 256 Query: 243 RLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGAR 302 + PL+ AA VA RVA GDL +ID GETG+LL +L M+ GL +V +VR+GA+ Sbjct: 257 HAIRNPLAHAASVARRVAHGDLTAQIDPAIKGETGELLEALTIMQSGLQTIVLDVRNGAQ 316 Query: 303 VMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQ 362 + SA EIA G L+LS+R QQA SL++TA +ME+L V+Q+A A+ A L +A+ Sbjct: 317 YINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTSTVKQNAGNARLASELANTASG 376 Query: 363 AALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQA 422 A+ GG V+ +V M A++ ++ RI +I+A +DG++ QTN+LALNAAVEAA AG G+ Sbjct: 377 VAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQTNILALNAAVEAARAGEQGRG 436 Query: 423 FSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQL 482 F+VVA EVR LA+RSA AA+EI+ L++++++++ GS AG +M+EVV V R+ ++ Sbjct: 437 FAVVATEVRSLAQRSAAAAKEIKTLIDNSVSKVEAGSTLVNEAGSTMREVVESVQRVTEI 496 Query: 483 IGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARF 542 I +++AS +Q++G +I Q+++ +DQ TQ+N LV+Q+SAA+E+M++ ++ L+ F Sbjct: 497 ITGISNASQEQASGIEQIQQAINQMDQVTQQNAALVEQASAASESMQMQAHKLTDLVGAF 556 Query: 543 RLETGEG 549 + T G Sbjct: 557 KTPTAMG 563 >gi|300311753|ref|YP_003775845.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 559 Score = 273 bits (698), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 196/541 (36%), Positives = 316/541 (58%), Gaps = 14/541 (2%) Query: 19 SVAASEAEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVATGEYQAERQYQAIAEI 78 +V A A +A A E R L AE RQG DDL++LARS+V +GE + Q+QA+ +I Sbjct: 31 TVYAERARQALAQAQETRFTALALAAEFRQGVDDLAQLARSYVVSGEPRLLEQHQAVLDI 90 Query: 79 RDGRRPRPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGFSRDEMAKVEEVRSRS 138 RDG+R RP+ Y R+YWDLV ADG+PPRPDS V V L +LM+QAG+S E+A+++E S Sbjct: 91 RDGQRARPQQYGRVYWDLVGADGQPPRPDSTVAVSLRKLMEQAGYSPAELARLDEAWLMS 150 Query: 139 GAVLAIELRAMELVRRHTRDRVLIDAALREDPLQQARRLLHDPRYELARAAMMRPLEALQ 198 A+ + E RAM+ ++ DA R P QQ +LH Y+L R ++++ + + Sbjct: 151 DALASTERRAMQEMQG--------DAGAR-GPAQQ---MLHGDGYQLHRTSILQAFDDMV 198 Query: 199 AMLDTRTRADILQARQARERLDTVVAAVGGLLLLVMIVSVASLYRLVTGPLSQAAQVASR 258 +L+ RT ++ A+ +RL + + +++++ VS+ LYR GPL+QA + ++ Sbjct: 199 GLLEQRTAREVALAQLLAQRLAWLSTLLAVAVVVILAVSLRLLYRGSAGPLAQATSMLAQ 258 Query: 259 VAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVMRGSAAEIADGALNL 318 +A+GDL G+ LL +LQ +R+ + LV+ V GA ++ +A ++A G ++ Sbjct: 259 LARGDLSDSAPVRARGQVAALLDALQRLRKAIVRLVKGVHAGAAAIQNAAGDMAAGTEHV 318 Query: 319 STRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAALEGGVAVSEMVGNM 378 R +QA +L Q A +M+QL VQQ QA L R A + V ++ M Sbjct: 319 VARTEEQAQALLQAAASMQQLAGTVQQHTAHTHQASRLARRACEVVRRSAAEVEQVASAM 378 Query: 379 HAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFSVVADEVRQLARRSA 438 A+ ++ RI ++ +D ++ Q+ LL +A++ +G G+ S VA +V LA+R+A Sbjct: 379 AAIKASSARITDLGGLIDSIAVQSKLLGASASLAGCGSGVGGRTLSSVAQDVSALAQRTA 438 Query: 439 DAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIGEVASASSQQSAGAR 498 AA E ++L A+ +I GSR+A A +M+E V V R++QLIG++A + +Q++G Sbjct: 439 SAAAEFKSLTETALQQIQNGSRKAVQAEGAMREAVYSVERVSQLIGQIAEVNLEQTSGID 498 Query: 499 RISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRLETGEGTSEGELVID 558 ++ Q + + TQ+N LL+QQ+++AA A+ TE++ A FRLE G +G +VID Sbjct: 499 QVVQVLRQVQLLTQQNGLLLQQTTSAARALNEQTEQLTQAAAEFRLEA--GYEDGCMVID 556 Query: 559 M 559 M Sbjct: 557 M 557 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 239 bits (611), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 179/550 (32%), Positives = 298/550 (54%), Gaps = 30/550 (5%) Query: 4 LSVVVALLLALLIALSVAASEAEDRVAIASERREQTQRLVAELRQGADDLSRLARSFVAT 63 L++V+++L+A++++L+ A +A + A + R + L ELR+ A+D+++ AR++V T Sbjct: 18 LALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANELRRTAEDMTKFARAYVTT 77 Query: 64 GEYQAERQYQAIAEIRDGRRPRPEHYERIYWDLVDADGRPPRPDSAVIVPLGELMQQAGF 123 G+ E +Y I +IR+G+R RP +Y+R WDLV+A P A VPLGELM++AGF Sbjct: 78 GDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDP-GAPGVPLGELMKRAGF 136 Query: 124 SRDEMAKVEEVRSRSGAVLAIELRAMELVRRHTRD----RVLIDAALREDPLQ-QARRLL 178 + +E+AK++E + IE+ A V+ D +I A P Q A+ L+ Sbjct: 137 TDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIGA-----PNQAMAQELV 191 Query: 179 HDPRYELARAAMMRPLEALQAMLDTRTRADILQARQARERLDTVVAAVGGLLLLVMIVSV 238 D Y +M P+ ++D RT+A++ QA + L+ + + ++V+ + Sbjct: 192 FDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLLAASVVVLFACL 251 Query: 239 ASLYRLV----TGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLV 294 YR++ G A V RVA+GDL + G+ +L S Q M + ++ Sbjct: 252 WLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLP-KGDKLSVLYSTQQMINKWTDVI 310 Query: 295 REVRHGARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQAC 354 +V A + ++ +I+ + LS AAQQA ++++T+ ++E++ + Q+AD A+ Sbjct: 311 GDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIAQNADNARTTD 370 Query: 355 SLTRSAAQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAA 414 + +A AA EGG AV E V M + G I++I + QTNLLALNAA+EAA Sbjct: 371 GIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDI-------AYQTNLLALNAAIEAA 423 Query: 415 HAGTHGQAFSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVA 474 AG HG+ F+VVA EVR+LA RS AAQEI A+ ++ A+ AG + ++V Sbjct: 424 RAGEHGKGFAVVAAEVRKLAERSQSAAQEIIAVAETSVG-------LAEKAGGLLNQMVP 476 Query: 475 QVGRLNQLIGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATER 534 + + L+ E+A+AS +QS G +I+ +V + Q TQ ++ SA +E M Sbjct: 477 SIRKTADLVQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIH 536 Query: 535 MAALMARFRL 544 + LM F++ Sbjct: 537 LQDLMRFFQV 546 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 238 bits (607), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 139/305 (45%), Positives = 204/305 (66%) Query: 241 LYRLVTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHG 300 L R +T PL+QA +A VA GDL RID ETG+LL++L+ M L +V VR G Sbjct: 208 LTRSITRPLNQAVTIAETVAAGDLTSRIDSSSRDETGKLLAALKTMNGNLLDIVGRVRMG 267 Query: 301 ARVMRGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSA 360 + ++ EIA G L+LS R QAGSL++TA AMEQL V+Q+AD A+QA L SA Sbjct: 268 TETINTASREIATGNLDLSARTEAQAGSLEETASAMEQLTSTVKQNADNARQANELAASA 327 Query: 361 AQAALEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHG 420 +Q A +GG V ++V M A+H ++ +I +I+ +DG++ QTN+LALNAAVEAA AG G Sbjct: 328 SQVATQGGAVVDQVVATMGAIHASSQKIADIIGVIDGIAFQTNILALNAAVEAARAGEQG 387 Query: 421 QAFSVVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLN 480 + F+VVA EVR LA+RSA AA+EI+ L++D++ +++ GSR AG +MQEVV V R+ Sbjct: 388 RGFAVVASEVRSLAQRSASAAKEIKQLIDDSVEKVDDGSRLVARAGDTMQEVVQSVARVT 447 Query: 481 QLIGEVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMA 540 ++ E+ AS +QS G +++ +++ ID+ TQ+N LV+Q++AAA +M+ + ++ Sbjct: 448 AVVREITLASQEQSDGIEQVNLAITHIDETTQQNAALVEQAAAAARSMQDQAASLTDAVS 507 Query: 541 RFRLE 545 FRLE Sbjct: 508 VFRLE 512 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 136/300 (45%), Positives = 209/300 (69%) Query: 245 VTGPLSQAAQVASRVAKGDLCGRIDGGFHGETGQLLSSLQDMRQGLSHLVREVRHGARVM 304 +T PL +A V+ VA+GDL I ETGQLL SL+DM Q L +V VR G + Sbjct: 215 ITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRSGTDTI 274 Query: 305 RGSAAEIADGALNLSTRAAQQAGSLQQTAVAMEQLNQAVQQSADRAQQACSLTRSAAQAA 364 +++EIA G L+LS+R QQA SL +TA AME+L V+Q+AD A+QA L SA+ A Sbjct: 275 STASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANSASAVA 334 Query: 365 LEGGVAVSEMVGNMHAVHLAAGRIEEIVAKLDGLSSQTNLLALNAAVEAAHAGTHGQAFS 424 +GG VS++V M A++ ++ +I +I++ +DG++ QTN+LALNAAVEAA AG G+ F+ Sbjct: 335 EQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 425 VVADEVRQLARRSADAAQEIRALLNDAMARINQGSRRAQTAGRSMQEVVAQVGRLNQLIG 484 VVA EVR LA+RSA AA+EI+ L+ND++ +++ GSR + AG +MQEVV+ V R+ ++ Sbjct: 395 VVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRVTDIVA 454 Query: 485 EVASASSQQSAGARRISQSVSAIDQATQRNVLLVQQSSAAAEAMRLATERMAALMARFRL 544 E+++AS++Q+ G +I+ +++ +DQ TQ+N LV++++AAA +M+ R+ +++ FRL Sbjct: 455 EISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.128 0.336 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,330,900 Number of extensions: 51594 Number of successful extensions: 624 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 429 Number of HSP's successfully gapped: 70 Length of query: 561 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 471 Effective length of database: 1,193,720 Effective search space: 562242120 Effective search space used: 562242120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)