BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0042.p (337 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC trans... 250 1e-67 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 248 7e-67 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 247 8e-67 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 243 2e-65 gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [H... 234 7e-63 >gi|300313814|ref|YP_003777906.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 362 Score = 250 bits (639), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 127/248 (51%), Positives = 178/248 (71%), Gaps = 9/248 (3%) Query: 1 MSYLNLQQVALGYG---NARTAVEGLNLAVQRGELISLLGPSGCGKTTTMRAIAGLIDLR 57 M+ L++ + L YG +A ++G+++ +QRGE+++LLGPSG GKTT +RA+AGL + Sbjct: 1 MTELSVNDLHLDYGTGAHANPILKGVSMELQRGEVVALLGPSGSGKTTLLRAVAGLESPK 60 Query: 58 AGTITL------DGRDISRLPPNKRDIGLVFQSYALFPHLNVFDNVAFGLRLRKVPAAEL 111 AG I + DG +P +R++GLVFQSYAL+PH V DNVA+GL+LRK P+ E+ Sbjct: 61 AGAIDIGKRRVFDGARNFEMPAEERNLGLVFQSYALWPHKTVADNVAYGLKLRKTPSGEI 120 Query: 112 RQRVEKVIAAVGLAGFEARLPAQMSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRV 171 RV+ V++ +GL R P Q+SGGQQQRVA+ARA+V P+++LLDEPLSNLDAKLR Sbjct: 121 ATRVKAVLSQLGLGHLGERYPHQLSGGQQQRVAIARALVYNPQVILLDEPLSNLDAKLRE 180 Query: 172 QMRAELRRIQRELGITMLYVTHDQDEALAMSDRIVVMNSGKIEQLDTPEQLFNAPRTRFV 231 + RA LR + LG++ L VTHDQ EA+A+SDRI+++N+G+IEQ TP+ ++ AP T F Sbjct: 181 EARAFLRELIVRLGLSALMVTHDQGEAMAISDRILLLNNGRIEQQGTPQSMYQAPNTLFT 240 Query: 232 ANFMGFEN 239 A FMG N Sbjct: 241 AEFMGSNN 248 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 248 bits (632), Expect = 7e-67, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 172/236 (72%), Gaps = 1/236 (0%) Query: 1 MSYLNLQQVALGYGNARTAVEGLNLAVQRGELISLLGPSGCGKTTTMRAIAGLIDLRAGT 60 M+ ++LQ V +G A+ AV ++ V+ G+ LLGPSGCGK+TT+R IAGL +G+ Sbjct: 1 MAAISLQGVCKHWGEAQ-AVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGS 59 Query: 61 ITLDGRDISRLPPNKRDIGLVFQSYALFPHLNVFDNVAFGLRLRKVPAAELRQRVEKVIA 120 I + GRD+++LPP +R I +VFQSYALFPHL+V DN+ FG+R+RK P A R+++V Sbjct: 60 IHIGGRDVTQLPPAQRKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVAD 119 Query: 121 AVGLAGFEARLPAQMSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELRRI 180 +GLA R PAQ+SGGQQQRVAL RAI+ + + L+DEPLSNLDA+LR +MR E+R + Sbjct: 120 ILGLAHLLERRPAQLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRAL 179 Query: 181 QRELGITMLYVTHDQDEALAMSDRIVVMNSGKIEQLDTPEQLFNAPRTRFVANFMG 236 Q++L +TM+YVTHDQ EA++M+D+++++ G+IEQ P L+ P T F A F+G Sbjct: 180 QQQLNMTMVYVTHDQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIG 235 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 247 bits (631), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 136/311 (43%), Positives = 198/311 (63%), Gaps = 17/311 (5%) Query: 4 LNLQQVALGYGNARTAVEGLNLAVQRGELISLLGPSGCGKTTTMRAIAGL-IDLRAGTIT 62 + L Q A + N A++ L+L + GE + LLGPSGCGKTTT+R IAGL G + Sbjct: 10 IRLSQCAKSFANGTRALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAGLEFPDEGGRVL 69 Query: 63 LDGRDISRLPPNKRDIGLVFQSYALFPHLNVFDNVAFGLRLRKVPAAELRQRVEKVIAAV 122 D++ LP KR +G+VFQ+YALFP+++V +N+A+G+++RK+ A E +RVE+++ V Sbjct: 70 FGEEDVTMLPIEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAGERAERVERLLEMV 129 Query: 123 GLAGFEARLPAQMSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELRRIQR 182 L G R Q+SGGQ+QRVALARA+ +EP++LLLDEPL+ LDAKLR +R++L ++ R Sbjct: 130 HLQGLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDAKLREAVRSDLNKLLR 189 Query: 183 ELGITMLYVTHDQDEALAMSDRIVVMNSGKIEQLDTPEQLFNAPRTRFVANFMGFENLFD 242 LGIT +YVTHDQ EA+A+ DRIVVM GKI Q+ TP++++ P FVA F+G N Sbjct: 190 SLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPANDFVAEFIGAMNRV- 248 Query: 243 YRDGQLHGAAGQLPLSGLP-------ANTACAGWRVQQVQV------GSGPYEGRVLSRG 289 DG + G QLP LP A A +R + V+V + G++++ Sbjct: 249 --DGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDITEADAHCLRGKLINTF 306 Query: 290 FLGEHVEYLLQ 300 FLG+ + ++ Sbjct: 307 FLGDRTRFEIE 317 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 243 bits (619), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 155/347 (44%), Positives = 218/347 (62%), Gaps = 24/347 (6%) Query: 3 YLNLQQVALGYGNARTAVEGLNLAVQRGELISLLGPSGCGKTTTMRAIAGLIDLRAGTIT 62 +L++++V +G+ TA++ ++L V+RGE++ LLGPSGCGKTT +R IAGL +G + Sbjct: 12 FLSVREVEKRFGSF-TALDRVSLEVRRGEMVCLLGPSGCGKTTLLRTIAGLERQDSGRLH 70 Query: 63 LDGRDISRLPPNKRDIGLVFQSYALFPHLNVFDNVAFGLRLRKVPAAELRQRVEKVIAAV 122 DGRDIS+LPP RD G++FQSYALFP+L+V DNVA+GL ++ + R+RV ++++ V Sbjct: 71 ADGRDISQLPPQARDYGILFQSYALFPNLSVADNVAYGLG--RMSRQQKRERVTEMLSMV 128 Query: 123 GLAGFEARLPAQMSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELRRIQR 182 GL G + + P Q+SGGQQQRVALARA+ P LLLLDEPLS LDA++R ++ E+RR+Q+ Sbjct: 129 GLDGSQDKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSALDAQVREHLQLEIRRLQK 188 Query: 183 ELGITMLYVTHDQDEALAMSDRIVVMNSGKIEQLDTPEQLFNAPRTRFVANFMGFENLFD 242 + IT L VTHDQ+EA+ M+DRI VM G+IEQ TPEQ++ P T FVA+F+G N Sbjct: 189 QFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYRRPATPFVADFIGQANWLP 248 Query: 243 YRDGQLHG---AAGQLPLSGLPANTACAGWRV----QQVQVGSGP-----YEGRVLSRGF 290 + +L G A G L L P + A R+ + VQ+ S + RV+ R + Sbjct: 249 F--TRLSGSQVAVGGLHLEIQPDESDRASGRLFCRPEAVQLFSDESCANRFLARVVDRIY 306 Query: 291 LGEHVEYLL-------QTALGEVRGMAPAAQALAREGDTVRFDLPAQ 330 LG+ L QT L +V A A D + LP Q Sbjct: 307 LGDRYRLALAADALPGQTLLADVSSQAHERVASLDTQDGLWVTLPRQ 353 >gi|300313835|ref|YP_003777927.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 234 bits (597), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 127/311 (40%), Positives = 188/311 (60%), Gaps = 18/311 (5%) Query: 1 MSYLNLQQVALGYGNARTAVEGLNLAVQRGELISLLGPSGCGKTTTMRAIAGLIDLRAGT 60 M+++N++Q+ Y + GLNL ++ GE L+GPSGCGK+T +R + GL ++ G Sbjct: 1 MAHVNIKQLRKTYDGRADVLAGLNLDIRDGEFCVLVGPSGCGKSTLLRMLCGLEEISGGE 60 Query: 61 ITLDGRDISRLPPNKRDIGLVFQSYALFPHLNVFDNVAFGLRLRKVPAAELRQRVEKVIA 120 + + G+ ++ LPP +R I +VFQSYAL+PH+NV+ N+AFGL++ +++ R+ A Sbjct: 61 LAIGGQVVNHLPPAERGIAMVFQSYALYPHMNVYKNMAFGLKVAGNSKSDIDARIRHAAA 120 Query: 121 AVGLAGFEARLPAQMSGGQQQRVALARAIVIEPKLLLLDEPLSNLDAKLRVQMRAELRRI 180 + + RLP ++SGGQ+QRVA+ RAIV +P+L L DEPLSNLDA LRVQ R E+ ++ Sbjct: 121 ILKIDHLLQRLPRELSGGQRQRVAIGRAIVRQPRLFLFDEPLSNLDAALRVQTRLEIAKL 180 Query: 181 QRELGITMLYVTHDQDEALAMSDRIVVMNSGKIEQLDTPEQLFNAPRTRFVANFMG---- 236 R+L T++YVTHDQ EA+ + D+IVVM+ G+I+Q TP +L+ P+ FVA F+G Sbjct: 181 HRQLAATIVYVTHDQVEAMTLGDKIVVMHEGRIQQAGTPLELYQQPQNLFVAGFIGSPKM 240 Query: 237 --FENLFDYRD---------GQLHGAAGQLPLSGLPANTACAGWRVQQVQVGSG---PYE 282 F+ + D G L A PL P G R +Q++ G G P Sbjct: 241 NFFQGVVTRCDDSGVQVEIAGGLRLLADVDPLGVTPGAAVTLGLRAEQIREGLGDGQPLH 300 Query: 283 GRVLSRGFLGE 293 G V LGE Sbjct: 301 GVVNLVEHLGE 311 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,023,000 Number of extensions: 44030 Number of successful extensions: 571 Number of sequences better than 1.0e-08: 133 Number of HSP's gapped: 346 Number of HSP's successfully gapped: 149 Length of query: 337 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 251 Effective length of database: 1,212,660 Effective search space: 304377660 Effective search space used: 304377660 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)