BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0040.p (286 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC trans... 109 2e-25 gi|300311432|ref|YP_003775524.1| molybdate ABC transporter perme... 74 1e-14 gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [... 70 2e-13 gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permeas... 70 2e-13 gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permeas... 63 2e-11 >gi|300310412|ref|YP_003774504.1| spermidine/putrescine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 427 Score = 109 bits (273), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/228 (33%), Positives = 123/228 (53%), Gaps = 4/228 (1%) Query: 57 FADFFAEP----LHLQVLWRTLRIAALVTLCSALLCYPAAQAIVRVHARWRGLVLGMMIL 112 F D A P ++ + RTL ++A+VT + LL YP A + + R L++ ++++ Sbjct: 193 FGDIEAAPPESAIYRTIFGRTLWMSAVVTCITLLLAYPLAYWLSTMPERRANLLMILVLI 252 Query: 113 PLMVSPIARTYAWIVLFGRNGAVNAVLLHLGLADEPQRLLFTEMAVFVGLLQLLLPLMLM 172 P S + R AWIVL G VN L+ GL P L+F + V++ + +LLP M++ Sbjct: 253 PFWTSILVRVAAWIVLLQSEGLVNKALMLAGLTQSPLELVFNRVGVYISMTHILLPFMIL 312 Query: 173 SLVSAMENISADLALAASTLGANAWQVFTRVTLPLTQEGLIVGGTLVFTGSVTAYVTPAL 232 L S M+++ A AA +LG++ + F RV +P T G+ G LVF + Y+TPAL Sbjct: 313 PLYSVMKSVPATYLKAAVSLGSHPFAAFWRVYVPQTYPGIGAGVLLVFIMAGGYYITPAL 372 Query: 233 LGGPKVLMLETLLYQKVSVESDFGTANVIAVILVAMTLAVNAVLKRIA 280 LGGP M+ + ++ ++G A + +L+A TL + V +R A Sbjct: 373 LGGPNEQMVSYFIAYFINTTINWGMACALGALLLAATLVLYGVYRRFA 420 >gi|300311432|ref|YP_003775524.1| molybdate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 224 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 58/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%) Query: 73 TLRIAALVTLCSALLCYPAAQAIVRVHARWRGLVLGMMILPLMVSPIARTYAWIVLFGRN 132 +L++A L TL + +L AA + R + R + ++ LPL++ P Y +VLFGR Sbjct: 11 SLKVAGLATLLNLVLGVAAAYGLSRWRSALRDFIDSVLTLPLVLPPTVLGYYLLVLFGRR 70 Query: 133 GAVNAVLLHLGLADEPQRLLFTEMAVFVGLLQLLLPLMLMSLVSAMENISADLALAASTL 192 GA+ A L +G+ L+FT + + PL+L S +A E++ + AA L Sbjct: 71 GALGAWLERMGI-----ELVFTWQGAVLASTVVAFPLVLKSARAAFESVDHQMEDAARVL 125 Query: 193 GANAWQVFTRVTLPLTQEGLIVGGTLVFTGSVTAYVTPALLGGP---KVLMLETLLYQKV 249 G + VF RV+LPL G++ G L F ++ + ++ G + L +Y+ V Sbjct: 126 GVSEAGVFFRVSLPLAMRGIMAGVLLAFARALGEFGATLMVAGNLPGRTQTLSVAIYEAV 185 Query: 250 SVESDFGTANVIAVI 264 D G+A ++ VI Sbjct: 186 QAGDD-GSATLLVVI 199 >gi|300311546|ref|YP_003775638.1| Fe3+ ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 578 Score = 70.5 bits (171), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 16/233 (6%) Query: 51 QWSLAR-FADFFAEPLHLQVLWRTLRIAALVTLCSALLCYPAAQAIVRVHARWRGLVLGM 109 +W+ +R FA FA L +L R+L ++A+ + + L Y A A+ R +GL G+ Sbjct: 66 EWAGSRPFAQLFANINFLPMLGRSLWVSAMTAVVTVPLAYVFAYALQRTCIPGKGLWRGI 125 Query: 110 MILPLMVSPIARTYAWIVLFGRNGAVNAVLLHLGLADEPQRLLFTEMAVFVGLLQLLLPL 169 +LPL+ + A I LFG G + ++ + +G + P Sbjct: 126 GLLPLLAPSLLPGIALIYLFGNQGLFKEWM---------DGSIYGFWGILLGEVFYTFPH 176 Query: 170 MLMSLVSAMENISADLALAASTLGANAWQVFTRVTLPLTQEGLIVGGTLVFTGSVTAYVT 229 LM L+SA+ L AA +GA+ W++FT VTLP T+ G+ LVFT ++T + Sbjct: 177 ALMILLSALSQADGRLYDAAQAMGASRWRIFTTVTLPATRYGIFGALCLVFTLTITDFGV 236 Query: 230 PALLGGP-KVLMLETLLYQKVSVESDFGTANVIA---VILVAMTLAVNAVLKR 278 P + GG VL +E Y+ V + FG +I ++ +T ++A L+R Sbjct: 237 PKITGGAYSVLAVEA--YKAVVGQQQFGRGALIGLLLLVPALLTFTLDAWLQR 287 >gi|300309934|ref|YP_003774026.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 291 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 126/282 (44%), Gaps = 20/282 (7%) Query: 3 ASSKSRLG----LMLVTPALIFTSVCFLLPVAALLLDAFRIG-GPDSLDGGPLQWSLARF 57 AS R G L P L +LLP+A L +G G DG S+ Sbjct: 16 ASRPRRAGNQVWLCFAVPGLTLFCAFWLLPMARL------VGVGASGPDGAMAYLSVLTN 69 Query: 58 ADFFAEPLHLQVLWRTLRIAALVTLCSALLCYPAAQAIVRVHARWRGLVLGMMILPLMVS 117 +FA L TL ++A VT + + + R + L+L M+ PL Sbjct: 70 RHYFAS------LVSTLALSAAVTAATLAISVFVGLFLQRHRFPGQALLLAMLTFPLAFP 123 Query: 118 PIARTYAWIVLFGRNGAVNAVLLHLGLADEPQRLLFTEMAVFVGLLQLLLPLMLMSLVSA 177 + + I+L GR G + A L GL E ++ +F+G L +P +++++V+A Sbjct: 124 GVVVGFMVIMLAGRQGLIGA--LTNGLFGESLVFAYSLAGLFLGYLYFSIPRVILTVVAA 181 Query: 178 MENISADLALAASTLGANAWQVFTRVTLPLTQEGLIVGGTLVFTGSVTAYVTPALLGGPK 237 E + L AA +LGA WQV V LP L+ G + F SV A+ T L Sbjct: 182 AEKLDPSLEEAARSLGARPWQVLLHVVLPALLPALVSSGAICFATSVGAFGTAFTLAA-N 240 Query: 238 VLMLETLLYQKVSVESDFGTANVIAVILVAMTLAVNAVLKRI 279 + +L +Y + + ++F TA ++++L +T AV A+ + + Sbjct: 241 IDVLPMTIYNEFTGYANFATAASLSIVLGVITWAVLALARSL 282 >gi|300310985|ref|YP_003775077.1| sulfate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 299 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 68/282 (24%), Positives = 129/282 (45%), Gaps = 45/282 (15%) Query: 12 MLVTPALIFTSVCFLLPVAALLLDAFRIGGPDSLDGGPLQWSLARFADFFAEPLHLQVLW 71 +L+ AL F ++ +P+ A+ +A R G W D + + W Sbjct: 34 LLIGIALAFLTLFLFVPLVAVFYEALRKG-----------W------DVYVASITEADAW 76 Query: 72 RTLRIAALVTLCSALLCYP--------AAQAIVRVHARWRGLVLGMMILPLMVSPIARTY 123 +++ TL +A + P AA AI + R + L+L ++ LP VSP+ Sbjct: 77 SAIKL----TLITAAIAVPLNLVFGVAAAWAIAKFEFRGKNLLLTLIDLPFSVSPVISGL 132 Query: 124 AWIVLFGRNGAVNAVLLHLG--LADEPQRLLFTEMAVFVGLLQLLLPLMLMSLVSAMENI 181 +++LFG G +LG L + ++LF + + + + P + L+ M++ Sbjct: 133 IYVLLFGLQG-------YLGPWLREHDIKILFAVPGIVLATIFVTFPFVARELIPLMQSQ 185 Query: 182 SADLALAASTLGANAWQVFTRVTLPLTQEGLIVGGTLVFTGSVTAY-----VTPALLGGP 236 ++ AA LGA+ W+ F VTLP + GL+ G L ++ + V+ + G Sbjct: 186 GSEEEEAALVLGASGWRTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGET 245 Query: 237 KVLMLE-TLLYQKVSVESDFGTANVIAVILVAMTLAVNAVLK 277 + L+ +LY + ++ F A+++A L +TLA+ +V++ Sbjct: 246 NTIPLQVEILYNEFNITGAFAVASLLA-FLALVTLAIKSVIE 286 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.328 0.139 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 869,441 Number of extensions: 36010 Number of successful extensions: 196 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 195 Number of HSP's successfully gapped: 9 Length of query: 286 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 202 Effective length of database: 1,222,130 Effective search space: 246870260 Effective search space used: 246870260 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)