BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0037.p (308 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311542|ref|YP_003775634.1| LysR family transcription regul... 120 1e-28 gi|300310792|ref|YP_003774884.1| LysR family transcription regul... 100 3e-22 gi|300312961|ref|YP_003777053.1| transcription regulator protein... 98 1e-21 gi|300313085|ref|YP_003777177.1| LysR family transcription regul... 91 1e-19 gi|300311724|ref|YP_003775816.1| LysR family transcription regul... 91 1e-19 >gi|300311542|ref|YP_003775634.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 85/286 (29%), Positives = 142/286 (49%), Gaps = 7/286 (2%) Query: 4 LNQKVTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQIS 63 + ++ R LQA + LAD F AA V+Q A SA I+++E G RLF+R T ++ Sbjct: 1 MQTNISTRLLQAFLALADCRHFGHAAQRCHVSQSAFSAMIQKIEAAAGARLFERDTRNVT 60 Query: 64 LTAQGSVVLEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAIPS-AVTLTAAVIARYNQA 122 LT +G + ++ AR L++ F D+ + + R+ + A+PS A V+A Y Q Sbjct: 61 LTPEGELFVQVARQLVSDIEAAFSDMSDYVARRKGRVAIAALPSLAAGWLPPVLADYRQR 120 Query: 123 HDEHVEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRR 182 + V + L D +D LD L GK+D + P+ L +T L D L+ + Sbjct: 121 Y-PGVTVELFDAISDQCLDLLRHGKVDIALTAPGPNLLE---FDTRPLCSDPFYLVCRKD 176 Query: 183 HPLSGAKEVQWRQMAGEEIV-LFTQGSVWEFASAALMQHGLASSRRYQVVHSESLYGVVR 241 H L+ + ++ Q+AG E++ L SV + A L G+ + +V H ++ ++ Sbjct: 177 HKLASKRRIKVPQLAGCEMIHLARSTSVRQHLDAVLRPGGVIHT-GLEVEHLATVAALIE 235 Query: 242 SGIAIGIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRS 287 SG+ + ++P L R +L PL P LKR ++++ E S S Sbjct: 236 SGLGVSVVPELTLFQFRLPNLVAIPLDAPELKRPLLIVTPKERSLS 281 >gi|300310792|ref|YP_003774884.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 302 Score = 99.8 bits (247), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/275 (27%), Positives = 133/275 (48%), Gaps = 16/275 (5%) Query: 12 HLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQGSVV 71 LQA + +A +SF AA+ L +TQPALS I+ LE L RLFDRTT ++SLT G + Sbjct: 9 ELQAFIAVARQSSFRAAAEGLFITQPALSRRIENLEQALQERLFDRTTRRVSLTPAGELF 68 Query: 72 LEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAIPS-AVTLTAAVIARYNQAHDEHVEIL 130 L +A+ ++ +E + R + V +PS A L V+ RY ++H +V + Sbjct: 69 LVHAQAVMEELELAVKSVEQRMAQRREHVTVACVPSVANNLLPQVLKRYARSH-ANVRVR 127 Query: 131 LQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLET--VTLFEDELVLIVSRRHPLSGA 188 + D +L+++ G+ DF V + +Q E L + + ++ HPL+ Sbjct: 128 IIDESAADVLESVRKGEADFGVNF-----IGAQEAEIDFAELTRERYLAVMPTHHPLAAH 182 Query: 189 KEVQWRQMAGEEIVLFTQG----SVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSGI 244 + W+ +AGE++V + S+ + A + + Q + +Y+ H +V +G+ Sbjct: 183 ASLNWKSLAGEKLVSVSSSSGNRSLIDNAFSRVPQRPVI---QYETNHVAGAISLVAAGL 239 Query: 245 AIGIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLM 279 + ++P L + P+ P L R + L+ Sbjct: 240 GVALLPELAIRNAPYKGIVARPVTSPVLSRAMGLI 274 >gi|300312961|ref|YP_003777053.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 300 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/262 (30%), Positives = 125/262 (47%), Gaps = 16/262 (6%) Query: 10 LRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQGS 69 LRHL+ +A T SFSRAA+ L + QP LS I+QLE LG L DR + I+LT G Sbjct: 3 LRHLKYFNAVASTLSFSRAAELLHIAQPPLSRQIRQLEEMLGVELIDRASRPIALTMAGK 62 Query: 70 VVLEYARHLLNTASNIFDDIEHAIGTGR-HRIRVGAIPSAV-TLTAAVIARYNQAHDEHV 127 E +L+ I ++ I GR H +G +PSA+ L +I R+ E + Sbjct: 63 FFYEQTLQVLSRLEQI-EEGTRVIARGRQHWFNIGFVPSALYGLLPEMIKRFRTEMPE-I 120 Query: 128 EILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRRHPLSG 187 EI ++ ++AL SG++D G P +S + T+ E+ LV + HPL Sbjct: 121 EIGFSEIVTMEQVEALKSGRIDVGFGRLP---ISDPDIVCETIVEEPLVAVFPLGHPLLA 177 Query: 188 AKEVQWRQMAGEEIVLFTQGSVWEFASAALMQHGLASSR--RYQVVHS----ESLYGVVR 241 +V Q+A + +L+ +A L + SSR R +V ++ G+V Sbjct: 178 RNKVTLAQLAAQRFILYPARPRPSYADQVL---DIFSSRALRPSIVKEANEMQTAIGLVA 234 Query: 242 SGIAIGIMPSLYTTYLRDDSLH 263 +G+ + ++P R D ++ Sbjct: 235 AGVGVTLVPRSVQGLHRSDVVY 256 >gi|300313085|ref|YP_003777177.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 315 Score = 90.9 bits (224), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/301 (25%), Positives = 138/301 (45%), Gaps = 28/301 (9%) Query: 8 VTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTAQ 67 +TL L+ +V +A F AA+A V QP LS +IK+LE++LG +F+R ++S+T Sbjct: 1 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVVIFERGGTEVSVTPL 60 Query: 68 GSVVLEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAI--------PSAVTLTAAVIARY 119 G+ ++ A +L + I + +R+G I PS L +I R Sbjct: 61 GAQIVAQAERVLEQTAAIKEIANQNKDPLSGPLRLGIIYTIGPYLLPS---LVKTMIERV 117 Query: 120 NQAHDEHVEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIV 179 Q + ++LQ+ L++ L G+LD + P L + L+++E ++ + Sbjct: 118 PQ-----MPLILQENFTTRLIELLRQGELDAAIMALP---FPEHGLNVLPLYDEEFMVAL 169 Query: 180 SRRHPLSGAKEVQWRQMAGEEIVLFTQG-----SVWEFAS--AALMQHGLASSRRYQVVH 232 R+H + KE+ R++ E ++L G V E + +G +R ++ Sbjct: 170 PRQHKWAERKEIDARELKSETMLLLGNGHCFRDQVLEVCPEMSRFSTNGDGIARTFEGSS 229 Query: 233 SESLYGVVRSGIAIGIMP--SLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRNEVSRSHWT 290 E++ +V SGI + ++P S+ RD + P P R++V+ R +R Sbjct: 230 LETIRHMVSSGIGVTVLPRASIPDVDTRDGMVRYVPFVAPAPSRRVVIAWRKSFTRQAAI 289 Query: 291 D 291 D Sbjct: 290 D 290 >gi|300311724|ref|YP_003775816.1| LysR family transcription regulator [Herbaspirillum seropedicae SmR1] Length = 297 Score = 90.5 bits (223), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 78/277 (28%), Positives = 128/277 (46%), Gaps = 4/277 (1%) Query: 7 KVTLRHLQALVTLADTNSFSRAADALAVTQPALSASIKQLENQLGTRLFDRTTHQISLTA 66 K+ + +QA V +AD SF AA AL VTQ A++ +++LE+ LG L +RTT I+LT Sbjct: 2 KIDILGVQAFVAIADHGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTE 61 Query: 67 QGSVVLEYARHLLNTASNIFDDIEHAIGTGRHRIRVGAIPSAVTLTAAVIARYNQAHDEH 126 G L AR LL + +I R + + +P+ I + A H Sbjct: 62 IGRDFLPQARRLLAELAGALVEIRETGIARRGDVSIACVPTVGVQYLPRILQAYSARYPH 121 Query: 127 VEILLQDMPNDALLDALHSGKLDFCVGIKPPDSLSSQTLETVTLFEDELVLIVSRRHPLS 186 I + D + A+ +A+ +++F + I L +V L ED VLI + HPL+ Sbjct: 122 NRIKILDHASSAVAEAVLRREVEFGIHIA---GEHHPELISVALTEDRYVLICPKDHPLA 178 Query: 187 GAKEVQWRQMAGEEIVLFTQ-GSVWEFASAALMQHGLASSRRYQVVHSESLYGVVRSGIA 245 + + WRQ+ ++ + S L +G A Y+V S + G+V G+ Sbjct: 179 RRRRIAWRQLQSYPLIFAGEVSSNRALLDPTLKANGFALRSFYEVQRSSTAVGLVAQGVG 238 Query: 246 IGIMPSLYTTYLRDDSLHVAPLRQPTLKRKIVLMRRN 282 + ++P L ++ V L P + R +VL+ R Sbjct: 239 VAVVPKLAIQEGAYPTVRVIELVDPVVSRSLVLITRK 275 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 904,241 Number of extensions: 36243 Number of successful extensions: 238 Number of sequences better than 1.0e-08: 54 Number of HSP's gapped: 215 Number of HSP's successfully gapped: 54 Length of query: 308 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 223 Effective length of database: 1,217,395 Effective search space: 271479085 Effective search space used: 271479085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)