BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0034.p
         (244 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311703|ref|YP_003775795.1| ABC-type export system outer me...    97   1e-21
gi|300309611|ref|YP_003773703.1| outer membrane channel lipoprot...    85   6e-18
gi|300312742|ref|YP_003776834.1| outer membrane efflux protein [...    57   2e-09

>gi|300311703|ref|YP_003775795.1| ABC-type export system outer
           membrane channel protein [Herbaspirillum seropedicae
           SmR1]
          Length = 489

 Score = 96.7 bits (239), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/250 (32%), Positives = 116/250 (46%), Gaps = 52/250 (20%)

Query: 21  RLLRWPCLACSTALALTLGGCAVGPDFKQPAAPTVSSYTAEKV--EATASLD-GQHFVAG 77
           + L W  LA       T  GC VGPDF  P  P VS YT + V  +  +  D  Q  + G
Sbjct: 11  KWLAWMLLA-------TQAGCLVGPDFVAPTPPRVSQYTRDPVLLDRMSEPDMSQQLLMG 63

Query: 78  QDVPAQWWKVFGSPALDALVDQ-----------VADTL------------------ASPL 108
           ++ PA+WW++FGSP LDA V Q           V++ L                  A+ +
Sbjct: 64  ENPPARWWQLFGSPELDAAVTQALTRNPTLQAAVSNLLLAEDNLRAGGAVFYPRLDANMM 123

Query: 109 ADNS-------------YIYNLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNAT 155
           A+ +              ++++ T    ++YA D+FG  RR +E   A  +VQ+   +A 
Sbjct: 124 AERTRSASLVQGSSAPDKVFSVATLSGAVSYAIDLFGEKRRTLEQLEAMVDVQQQLHHAA 183

Query: 156 YLTLVSNVVLAVVNEAALREQLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLL 215
           YLTL +NVV A +  A    Q+    Q  AL   QL+ ++ +   G   LAD+ +Q SLL
Sbjct: 184 YLTLTANVVNAYIARAGYLSQISLVRQIIALEELQLEAIQARVDTGVAPLADLLSQASLL 243

Query: 216 AQAQAALPAL 225
           A  QA L  L
Sbjct: 244 AGNQALLAQL 253


>gi|300309611|ref|YP_003773703.1| outer membrane channel lipoprotein
           [Herbaspirillum seropedicae SmR1]
          Length = 493

 Score = 84.7 bits (208), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 71/230 (30%), Positives = 99/230 (43%), Gaps = 44/230 (19%)

Query: 40  GCAVGPDFKQPAAPTVSSYTAEKVEATASLDG--QHFVAGQDVPAQWWKVFGSPALDALV 97
           GCA GP  + PA P    Y A+   A    +G  Q FV GQ    QWW+ +GSP L A V
Sbjct: 20  GCAFGPTGEAPAMPRPDHYAAQATPADVGPEGARQRFVLGQRAVPQWWQAYGSPELSAWV 79

Query: 98  D----------QVADTLAS--------------PLAD------------------NSYIY 115
           +          Q    LAS              P  D                   + +Y
Sbjct: 80  EEALRNNHSLAQAERNLASARLQLRAQIDQSLWPSVDAVGQAQRQRALGLPNIGPTTNLY 139

Query: 116 NLHTAQLNIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYLTLVSNVVLAVVNEAALRE 175
           N+   Q+  +Y  D+FG  R    A  AQ + Q +Q +A    LV+NVV++ +N AALR 
Sbjct: 140 NVFAGQIRASYTFDLFGTERYANAATAAQVDAQSYQFDAARRALVANVVISAINAAALRV 199

Query: 176 QLQAAEQAAALAARQLDLVRQQRALGALGLADVAAQESLLAQAQAALPAL 225
           Q+   E+  ALA      V+++  LGA    D+ A  +     +A+LP L
Sbjct: 200 QVSDTERLVALAEADASEVQRRAELGAASQDDLLAARANAQSLRASLPGL 249


>gi|300312742|ref|YP_003776834.1| outer membrane efflux protein
           [Herbaspirillum seropedicae SmR1]
          Length = 492

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 63/223 (28%), Positives = 86/223 (38%), Gaps = 41/223 (18%)

Query: 39  GGCAVGPDFKQPAAPTVSSYTAEKVEATASLDGQHFVAGQDVP-AQWWKVFGSPALDALV 97
           GGCA+    +    P +     +K    AS D  H  A Q  P   WWK FGS  L  LV
Sbjct: 33  GGCAM---REVQTDPILEMQVPDKWGGGASADVAH--AEQLWPDTDWWKQFGSNELSELV 87

Query: 98  DQ--------------------VADTLASPLADNSYIY---------------NLHTAQL 122
           +Q                     A    +PL  ++ I                N   A L
Sbjct: 88  EQGQRNNYEIAAAYSRVKQAEAQARIAGAPLLPSAGINAGAAREIPISGGTPTNTANASL 147

Query: 123 NIAYAPDIFGGTRRQIEAGRAQAEVQRFQRNATYLTLVSNVVLAVVNEAALREQLQAAEQ 182
            ++Y  D +G  R  +EA  A     R+ R    LT+ S +V   +   +LR++L  A Q
Sbjct: 148 QVSYEIDFWGKNRAGVEAAEATLRANRYDRETVALTVTSGIVSTYLQVLSLRDRLAIARQ 207

Query: 183 AAALAARQLDLVRQQRALGALGLADVAAQESLLAQAQAALPAL 225
               A R L LV  Q   G+    D+A Q S LA  +  +P L
Sbjct: 208 NVQNAERVLRLVEAQSRAGSASPLDLARQRSALANQRQLIPDL 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.130    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 559,652
Number of extensions: 20695
Number of successful extensions: 96
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 96
Number of HSP's successfully gapped: 6
Length of query: 244
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 161
Effective length of database: 1,226,865
Effective search space: 197525265
Effective search space used: 197525265
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)