BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0023.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311752|ref|YP_003775844.1| cytochrome b561 protein [Herbas...   295   1e-81
gi|300310020|ref|YP_003774112.1| cytochrome b561 protein [Herbas...    81   5e-17

>gi|300311752|ref|YP_003775844.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 189

 Score =  295 bits (756), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 153/176 (86%), Positives = 165/176 (93%)

Query: 16  TRYHPLYAALHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLIFVVVRL 75
           +RYHPL   LHW++F+LFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLI VV+RL
Sbjct: 13  SRYHPLSVILHWVIFLLFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLILVVLRL 72

Query: 76  IARKLMGVPPELPLPRLQQLGASAVHLLLYAVMIGLPITGILFTQAGGRDVVFFGMTLPV 135
           +ARK  GVPPEL LPR+Q+ GA+AVHLLLYAVMIGLP+TGILFTQAGGRDVVFFGMTLPV
Sbjct: 73  LARKAFGVPPELALPRVQRWGAAAVHLLLYAVMIGLPVTGILFTQAGGRDVVFFGMTLPV 132

Query: 136 ILAKDMAVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQRMSLRSPRK 191
           ILAKDMA+RGPIKE HEFMGNAVYFLVGLHVLGALWHQ FDRMPILQRMSLR PR+
Sbjct: 133 ILAKDMALRGPIKEFHEFMGNAVYFLVGLHVLGALWHQFFDRMPILQRMSLRGPRQ 188


>gi|300310020|ref|YP_003774112.1| cytochrome b561 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 174

 Score = 81.3 bits (199), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 4/163 (2%)

Query: 25  LHWLMFILFVVALATIEYRDDIPKGDPLRDLLRTVHMHAGQLVLIFVVVRLIARKLMGVP 84
           LHWL+ +L + A        DIP   P +    + H   G  VL     RL+ R L    
Sbjct: 11  LHWLIALLIISAFGLGLTMVDIPGLTPTKLKYFSWHKWLGVTVLALACARLLWR-LTHRA 69

Query: 85  PELP--LPRLQQLGASAVHLLLYAVMIGLPITGILFTQAGGRDVVFFG-MTLPVILAKDM 141
           P  P  +P+ QQ  A  +HL LYA+M  +P++G  ++ A G  VV+ G + LPV++A + 
Sbjct: 70  PAYPAHMPQWQQSAAHGLHLGLYALMFAIPVSGYFYSLAAGVPVVYLGVLPLPVLMAPNP 129

Query: 142 AVRGPIKEVHEFMGNAVYFLVGLHVLGALWHQLFDRMPILQRM 184
            ++  +KE H ++   +     LHVL AL HQ  DR  I +R+
Sbjct: 130 ELKPLLKETHYWLNMILLGAFALHVLAALKHQFIDRDNIFKRI 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.330    0.146    0.445 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 580,661
Number of extensions: 23065
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 3
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)