BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0022.p
         (121 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311751|ref|YP_003775843.1| signal transduction histidine k...   122   6e-30
gi|300313819|ref|YP_003777911.1| two component sensor histidine ...    85   1e-18
gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra...    82   1e-17
gi|300309980|ref|YP_003774072.1| two component transmembrane sen...    77   4e-16
gi|300311468|ref|YP_003775560.1| oxidative stress resistance two...    73   7e-15

>gi|300311751|ref|YP_003775843.1| signal transduction histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 446

 Score =  122 bits (307), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/116 (60%), Positives = 81/116 (69%), Gaps = 5/116 (4%)

Query: 1   VDSNPVELGLLLGNLIDNAIRYTPPGGCISLALAATAQTPPGRVRLEITDNGPGIPASER 60
           V + P EL  LL NLIDNAI YTP GG +SL +   AQ     V LEI D GPGI ASER
Sbjct: 334 VLTQPQELAQLLRNLIDNAIAYTPAGGAVSLRMERHAQW----VALEICDTGPGIAASER 389

Query: 61  ERVFQPFHRLDPAAAPGAGLGLAIVQSVAARLDIMIGLAASDEKSQSGLRVILDIP 116
           ERVFQPF+R+DP +  G+GLGLAIVQS+A RL + + L A+D   QSGLRV L IP
Sbjct: 390 ERVFQPFYRIDP-SGQGSGLGLAIVQSIARRLGVTLRLEAADPAQQSGLRVRLLIP 444


>gi|300313819|ref|YP_003777911.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 485

 Score = 85.1 bits (209), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 51/122 (41%), Positives = 78/122 (63%), Gaps = 14/122 (11%)

Query: 1   VDSNPVELGLLLGNLIDNAIRYTPPGGCISLALAATAQTPPGR---VRLEITDNGPGIPA 57
           +++N + L  L+ NL+DNAIRYTP GG ++L +   AQ+ PG+     LE+ D+GPGIPA
Sbjct: 361 IEANALLLHELMVNLLDNAIRYTPAGGHVTLRV--RAQSSPGQPTVALLEVEDSGPGIPA 418

Query: 58  SERERVFQPFHR------LDPAAAPGAGLGLAIVQSVAARLDIMIGLAASDEKSQSGLRV 111
           +ERE+VF+PF+R      ++P    G GLGL+IV+ +AA     + L A  + S   +R+
Sbjct: 419 AEREKVFEPFYRAGATQHVNPG---GTGLGLSIVREIAAMHRASVTLDAPAQGSGLVVRI 475

Query: 112 IL 113
           + 
Sbjct: 476 VF 477


>gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score = 82.4 bits (202), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 69/119 (57%), Gaps = 19/119 (15%)

Query: 1   VDSNPVELGLLLGNLIDNAIRYTPPGGCISLALAATAQTPPGRVRLEITDNGPGIPASER 60
           V+ N  +L  +L NLIDNA+RYTP GG +++ L    +    ++ + ++DNGPGIPA  R
Sbjct: 346 VNGNEAQLMGMLMNLIDNALRYTPEGGKVTVGL----EKKRSQMIITVSDNGPGIPAEVR 401

Query: 61  ERVFQPFHRLDPAAAPGAGLGLAIVQSVAARLDIMIGLAASDEKSQSGLRVILDIPAPG 119
           ERVF+ F+R      PG+GLGLAIV+ +              + SQ  +R  LD PA G
Sbjct: 402 ERVFERFYRNAAPDQPGSGLGLAIVREIV-------------QASQGSIR--LDAPAQG 445


>gi|300309980|ref|YP_003774072.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score = 77.0 bits (188), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 61/103 (59%), Gaps = 2/103 (1%)

Query: 1   VDSNPVELGLLLGNLIDNAIRYTPPGGCISLALAATAQTPPGRVRLEITDNGPGIPASER 60
           +  NPV L  LL NL+DNA+ YTP  G   + + A      G   LE+ DNGPGIP +ER
Sbjct: 258 ITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGGLAILEVEDNGPGIPVAER 317

Query: 61  ERVFQPFHRL--DPAAAPGAGLGLAIVQSVAARLDIMIGLAAS 101
             VF+ F+R+   P+   G GLGLAIV+ +A + +  + + ++
Sbjct: 318 ANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITSN 360


>gi|300311468|ref|YP_003775560.1| oxidative stress resistance two
           component transmembrane sensor histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 455

 Score = 72.8 bits (177), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 43/119 (36%), Positives = 67/119 (56%), Gaps = 3/119 (2%)

Query: 4   NPVELGLLLGNLIDNAIRYTPPGGCISLALAATAQTPPGRVRLEITDNGPGIPASERERV 63
           N  EL  +  NL++NA RY    G     +   ++    +V +E+ D+GPG+P +E ER+
Sbjct: 334 NGTELARVFSNLVENARRYGKTEGTDCAEIDIRSRIEGHQVVVEVADHGPGVPVNECERL 393

Query: 64  FQPFHRLDPA--AAPGAGLGLAIVQSVAARLDIMIGLAASDEKSQSGLRVILDIPAPGQ 120
            +PF RLD A   A G+GLGLAIV  +  + +  + L    E+++SGL V + +P  G 
Sbjct: 394 LRPFTRLDTARGQANGSGLGLAIVNRIVLKHNGKL-LLKGHEETRSGLLVQITLPLQGH 451


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 385,940
Number of extensions: 13570
Number of successful extensions: 130
Number of sequences better than 1.0e-08: 19
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 19
Length of query: 121
Length of database: 1,619,870
Length adjustment: 74
Effective length of query: 47
Effective length of database: 1,269,480
Effective search space: 59665560
Effective search space used: 59665560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)