BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0021.p (327 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311751|ref|YP_003775843.1| signal transduction histidine k... 311 4e-86 gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine ... 95 8e-21 gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 93 4e-20 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 89 4e-19 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 81 1e-16 >gi|300311751|ref|YP_003775843.1| signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 446 Score = 311 bits (798), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 179/293 (61%), Positives = 219/293 (74%), Gaps = 1/293 (0%) Query: 4 LQRSLQARLSLALTLAILVVALCAGAFGFLSAYRDSIRQQDDLLLQVGTLIARLGGTLPA 63 ++RSLQA+LSLALT AILVVAL AG FGF++AYRDSIR QDDLL+QVG L+ G L Sbjct: 8 MKRSLQAQLSLALTAAILVVALGAGGFGFVTAYRDSIRSQDDLLMQVGALLKHSGAALSL 67 Query: 64 DGAEGSYPGADHESRISVQWLPEPGQSLPAGTALPLPAGLQDGFQTAVMFHENFRVYVQP 123 +GA + G +H+SR++VQWLP+PG LPLPA L +GF T ++ HE FRVYVQ Sbjct: 68 EGAGMAAAGDEHDSRVTVQWLPDPGDPPADAAPLPLPADLAEGFHTLLLHHEYFRVYVQA 127 Query: 124 LASGRRIALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREI 183 L +G+R+ALAQETD+R IA RSAWRA+ P ++L P+LLLA++ I++ LFAPL LR+EI Sbjct: 128 LPNGKRLALAQETDLRQHIAQRSAWRALWPFVVLAPLLLLAVQRIIKRLFAPLQALRQEI 187 Query: 184 DQRRDDQLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALS 243 D R +D L P+A + LP E+ V AIN LLARV+ M AQRRFVADAAHELRTPL ALS Sbjct: 188 DSRGEDDLQPIAERLLPREVQAFVAAINGLLARVEAGMAAQRRFVADAAHELRTPLTALS 247 Query: 244 LQAEGLQRSELSDTARARLQRLEQGLERARALVTQLLALARGVRWXCCA-RPC 295 LQAE L R+ +S+TAR RL RLE GL+RAR LVTQLLALAR A +PC Sbjct: 248 LQAERLGRAPMSETARERLTRLETGLQRARQLVTQLLALARAQTPAGAALQPC 300 >gi|300313679|ref|YP_003777771.1| transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 444 Score = 95.1 bits (235), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 81/190 (42%), Positives = 111/190 (58%), Gaps = 5/190 (2%) Query: 96 ALPLPAGLQDGFQTAVMFHENFRVYVQPLASGRRIALAQETDVRDGIASRSAWRAVIPVL 155 A+P A L GF + +RVY + S + +AQ RD IA++ A + V+P+L Sbjct: 91 AMPRQAEL--GFANVSGPNGMWRVYSAQIGS-TVVQVAQPQSARDEIAAQMAVKTVVPLL 147 Query: 156 LLVPVL-LLALRHIMRTLFAPLAQLRREIDQRRDDQLDPLATQGLPVEISPVVDAINRLL 214 LL P++ +L+ + R L AP+ + E+ R + L PLA G+P EI P+ A+N LL Sbjct: 148 LLFPLIGVLSWVAVSRGL-APVRKAAAEVAARDMNSLQPLADVGMPQEIQPLTHALNDLL 206 Query: 215 ARVQGAMTAQRRFVADAAHELRTPLAALSLQAEGLQRSELSDTARARLQRLEQGLERARA 274 AR++ A QR FVADAAHELRTPL AL LQ + +R+ + RA L+ GLER Sbjct: 207 ARLKHATETQRAFVADAAHELRTPLTALRLQTQLAERAVDEEERRAAFADLKNGLERTTH 266 Query: 275 LVTQLLALAR 284 LV QLL LAR Sbjct: 267 LVHQLLTLAR 276 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 92.8 bits (229), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 53/155 (34%), Positives = 93/155 (60%) Query: 130 IALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREIDQRRDD 189 + + + + R +A+ ++P +++PV L + + +PL++L++ I RR D Sbjct: 55 VQVGETLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPD 114 Query: 190 QLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALSLQAEGL 249 L P+ + +P EISP+V ++N +LAR+ + Q+RF+ADAAH+++TPLA + +Q+E Sbjct: 115 DLSPIDSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELA 174 Query: 250 QRSELSDTARARLQRLEQGLERARALVTQLLALAR 284 R + R L++L + E A LV QLL+LAR Sbjct: 175 LRQDDQVDVRRSLEQLAKSSETATRLVNQLLSLAR 209 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 89.0 bits (219), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 57/169 (33%), Positives = 94/169 (55%), Gaps = 4/169 (2%) Query: 130 IALAQETDVRDGIASRSAWRAVIPVLLLVPVLLLALRHIMRTLFAPLAQLRREIDQRRDD 189 + +A+ + R +A + W +I L+ V++ +++R P+ LRR++D+R D Sbjct: 155 VQVAETMENRSALARKIFWETLIRQAALLVVIVSVTLYVVRRALQPVDALRRQLDERPAD 214 Query: 190 QLDPLATQGLPVEISPVVDAINRLLARVQGAMTAQRRFVADAAHELRTPLAALSLQAEGL 249 L P+A P E+ P +DA+N+L+AR++ + Q+RFVA+A+H+LRTPLA L Q + Sbjct: 215 DLSPVAPPMAPRELQPFIDALNQLMARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSG 274 Query: 250 QRSELSDTARARLQRLEQGLERARALVTQLLALAR--GVRWXCCARPCD 296 R + A Q + +ERA L QLL+LA+ +R CD Sbjct: 275 LRGDAP--APVIWQEMSGTVERATTLANQLLSLAKVEQIRGRGAQEVCD 321 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 81.3 bits (199), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 53/127 (41%), Positives = 77/127 (60%), Gaps = 7/127 (5%) Query: 160 VLLLALRHIMRTLFAPLAQLRREIDQRRDDQLDPLATQGLPVEISPVVDAINRLLARVQG 219 V+L+A+R +R PL L+R ++QR +L + +G PVE+ P++ A+N L+AR+ Sbjct: 177 VVLVAVRRGLR----PLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINK 232 Query: 220 AMTAQRRFVADAAHELRTPLAALSLQAEGL--QRSELSDTARARLQRLEQGLERARALVT 277 AQ+ F+AD AH+LRTPL L LQ E L + + DTAR+ L + +ER Sbjct: 233 GEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARS-LAMMNSSVERMIRQSR 291 Query: 278 QLLALAR 284 QLLALAR Sbjct: 292 QLLALAR 298 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.325 0.136 0.420 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 961,471 Number of extensions: 39880 Number of successful extensions: 237 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 234 Number of HSP's successfully gapped: 10 Length of query: 327 Length of database: 1,619,870 Length adjustment: 85 Effective length of query: 242 Effective length of database: 1,217,395 Effective search space: 294609590 Effective search space used: 294609590 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 131 (55.1 bits)