BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0006.p (164 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [... 206 8e-55 gi|300314042|ref|YP_003778134.1| signal transduction protein con... 162 1e-41 gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014... 160 4e-41 gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protei... 144 4e-36 gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodies... 143 5e-36 >gi|300311871|ref|YP_003775963.1| EAL domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 1036 Score = 206 bits (524), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 99/157 (63%), Positives = 126/157 (80%) Query: 5 IAVNVSAVQVRQPDFVKSILETLQATGADPCHLKLELTESAMVEDVQATIEKMMELKQHG 64 IAVNVSA Q+R+PDFV+++L+T++ TGA+P LKLELTES +V++V+ I+KM LK +G Sbjct: 867 IAVNVSAPQLREPDFVQTVLDTIERTGANPRRLKLELTESLLVDNVEDIIQKMFALKAYG 926 Query: 65 LALSLDDFGTGYSSLSLLKRLPIDQLKIDQSFVRELLFAPSDVAIAKSIITLADALGLEV 124 + SLDDFGTGYSSLS LKRLP++QLKIDQSFVR++L P+D +IAK+I+ LA +LGL V Sbjct: 927 VEFSLDDFGTGYSSLSYLKRLPLNQLKIDQSFVRDVLIDPNDASIAKTIVNLAQSLGLGV 986 Query: 125 IAEGVETREQQQFLAALGCTRYQGYLFGRPVPAEQFD 161 IAEGVET Q+ FLA GC YQGY F RPV E F+ Sbjct: 987 IAEGVETDAQRSFLADAGCHAYQGYFFCRPVTVEAFE 1023 >gi|300314042|ref|YP_003778134.1| signal transduction protein containing a membrane domain, an EAL and a GGDEF domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 948 Score = 162 bits (411), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 86/162 (53%), Positives = 110/162 (67%) Query: 3 VVIAVNVSAVQVRQPDFVKSILETLQATGADPCHLKLELTESAMVEDVQATIEKMMELKQ 62 + ++VN+S Q Q D V SI + L+ TG P L+LELTES M+ DV+ I + LK+ Sbjct: 780 ISVSVNLSVGQFLQKDLVSSIADVLEDTGLPPESLELELTESLMMTDVEHAIGILAGLKK 839 Query: 63 HGLALSLDDFGTGYSSLSLLKRLPIDQLKIDQSFVRELLFAPSDVAIAKSIITLADALGL 122 G+ LS+DDFGTGYSSL+ LKR PID LKID+SFVR++ D AI SII+LA L L Sbjct: 840 LGVRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKL 899 Query: 123 EVIAEGVETREQQQFLAALGCTRYQGYLFGRPVPAEQFDDVM 164 VIAEGVET EQ +L GC QGYLF PVPA++F+ ++ Sbjct: 900 RVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVPADKFEQIL 941 >gi|300309360|ref|YP_003773452.1| hypothetical protein Hsero_0014 [Herbaspirillum seropedicae SmR1] Length = 726 Score = 160 bits (405), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 78/162 (48%), Positives = 111/162 (68%) Query: 3 VVIAVNVSAVQVRQPDFVKSILETLQATGADPCHLKLELTESAMVEDVQATIEKMMELKQ 62 +V+A+NVSA + + +FV E ++ +K+ELTES MV+ ++ I KM L+ Sbjct: 558 LVVAINVSAQEFKVDNFVYRFREIMREHHVPSHSVKVELTESMMVDHIEDVITKMQALRS 617 Query: 63 HGLALSLDDFGTGYSSLSLLKRLPIDQLKIDQSFVRELLFAPSDVAIAKSIITLADALGL 122 + +++SLDDFGTGYSSLS L R PIDQ+KIDQ+FVRE+ + +I +SII L +L L Sbjct: 618 NEVSISLDDFGTGYSSLSYLGRFPIDQIKIDQTFVREMQNDAAMASIIRSIIMLGQSLNL 677 Query: 123 EVIAEGVETREQQQFLAALGCTRYQGYLFGRPVPAEQFDDVM 164 +IAEGVET +Q+ FL A GC YQGY + +P+P EQF D++ Sbjct: 678 SIIAEGVETEQQRDFLHAQGCLLYQGYWYSKPIPGEQFADLL 719 >gi|300312606|ref|YP_003776698.1| EAL domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 695 Score = 144 bits (362), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 75/164 (45%), Positives = 103/164 (62%) Query: 1 VPVVIAVNVSAVQVRQPDFVKSILETLQATGADPCHLKLELTESAMVEDVQATIEKMMEL 60 V ++VN+SA+Q P ++ + TL+ P L LE+TES + D +A+++ + ++ Sbjct: 524 VDWTMSVNLSALQFADPHLLEVVRTTLERHQLPPPCLTLEVTESTAMHDTEASLQTLRQI 583 Query: 61 KQHGLALSLDDFGTGYSSLSLLKRLPIDQLKIDQSFVRELLFAPSDVAIAKSIITLADAL 120 G+ +S+DDFGTGYSSL LKRLP ++LKID+ FVREL D AI +I+ L L Sbjct: 584 ADLGVEISIDDFGTGYSSLLYLKRLPANELKIDRGFVRELRQDGEDAAIVSAIVALGRTL 643 Query: 121 GLEVIAEGVETREQQQFLAALGCTRYQGYLFGRPVPAEQFDDVM 164 L ++AEGVET EQQ FL A GC QGYL GRP+ E F M Sbjct: 644 NLRIVAEGVETVEQQDFLTAAGCDALQGYLMGRPMTPELFLQTM 687 >gi|300312904|ref|YP_003776996.1| diguanylate cyclase/phosphodiesterase with PAS/PAC sensor domains protein [Herbaspirillum seropedicae SmR1] Length = 701 Score = 143 bits (361), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 76/165 (46%), Positives = 105/165 (63%), Gaps = 5/165 (3%) Query: 2 PVVIAVNVSAVQVRQ--PDFVKSILETLQATGADPCHLKLELTESAMVEDVQATIEKMME 59 P+ +AVN+S Q+ Q PDFV +L +G L+LE+TE+ +++D + ++ + Sbjct: 527 PIPVAVNLSPRQLNQSLPDFVAGVLAQ---SGLAASWLELEITENVVMKDAEKSVATLHA 583 Query: 60 LKQHGLALSLDDFGTGYSSLSLLKRLPIDQLKIDQSFVRELLFAPSDVAIAKSIITLADA 119 LK+ GL +S+DDFGTGYSSLS L+R P+D LKID+SFVR+++ AI K+II+LA Sbjct: 584 LKRLGLQISVDDFGTGYSSLSYLRRFPVDALKIDKSFVRDIVRDADSAAIVKAIISLAHI 643 Query: 120 LGLEVIAEGVETREQQQFLAALGCTRYQGYLFGRPVPAEQFDDVM 164 L L VIAEGVE EQ FL C QGY FG+P+ F M Sbjct: 644 LNLRVIAEGVEDEEQHAFLKENACDEVQGYYFGKPMEVAVFTAWM 688 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 436,351 Number of extensions: 15907 Number of successful extensions: 60 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 58 Number of HSP's successfully gapped: 18 Length of query: 164 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 86 Effective length of database: 1,250,540 Effective search space: 107546440 Effective search space used: 107546440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)