BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0003.p (393 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbasp... 175 5e-45 gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurizatio... 164 1e-41 gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbasp... 157 2e-39 >gi|300314032|ref|YP_003778124.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 421 Score = 175 bits (444), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 123/378 (32%), Positives = 196/378 (51%), Gaps = 13/378 (3%) Query: 16 AAQRDAQREQPFDVIAEVKATGFGAGRLDADYGGGGATFVETLDTAIQLGAADPNVAHIW 75 AA RD +R+ P+D + +G + +YGG G ++ + + AAD ++ I Sbjct: 53 AALRDRERKLPWDELERYVRSGLWGITVPKEYGGAGVSYGTLAEVIATISAADGSIGQIP 112 Query: 76 RNHHVALERLLNAPLQHAGVQRLRERVRAGDLVGASHTELGQPQIGGNAPLATRLVR--Q 133 +NH A+E L+ + + ERV GD G + ELG + TRL R Sbjct: 113 QNHFYAVE-LIRVNGSESQKRFFFERVLQGDRFGNALAELGTKT---SHDRKTRLSRNAH 168 Query: 134 GDHYVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREGVQTVDDWFGMGQRLTG 193 G Y ++G+KFY+TG+L+ADW+ +V +DG + + ++PR G+ +DDW G GQR TG Sbjct: 169 GPGYRIDGRKFYATGALYADWVPTSVIDDDGVQQLAIVPRHAPGLTIIDDWSGFGQRTTG 228 Query: 194 SGTTIFENVVVAADEVVLPDQVPARQAVFGSTIAQLFLTSVIAGVVSAVARDGAALLGKR 253 SG+ +FENV V AD V+ +R G +AQ+ ++ G+ A D + R Sbjct: 229 SGSAVFENVHVPADAVIGFATAFSRPTQIGP-MAQIQHAAIDLGIARAAYADLLTFVRTR 287 Query: 254 RRNYYYAPTPSAAQDPILLTALGERDADAFATRAVVLAAAVEADRAYAALKANAYDADDR 313 R + + A DP+ + +G+ A A++ A + D A AA +D Sbjct: 288 SRAWVDSGVERAVDDPLTIREVGDLTIQLHAAEALLRRAGRKVDAAAAAPD------EDS 341 Query: 314 LQDAAAAAARAKITVDRIAHHAATALFDIAGASATLAQFNLDRHWRNIRTISTHNPTSHK 373 + A+ A A A++ ++ A + LF++AG+ +TLA+ NLDRHWRN RT + H+P K Sbjct: 342 VAAASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLAEHNLDRHWRNARTHTLHDPVRWK 401 Query: 374 AYALGNLSVNQVRLPTQG 391 +A+GN +N + P G Sbjct: 402 YHAIGNYVLNGKKPPRHG 419 >gi|300310289|ref|YP_003774381.1| dibenzothiophene desulfurization flavin reductase [Herbaspirillum seropedicae SmR1] Length = 419 Score = 164 bits (416), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 120/391 (30%), Positives = 184/391 (47%), Gaps = 23/391 (5%) Query: 8 LLQRIADGAAQRDAQREQPFDVIAEVKATGFGAGRLDADYGGGGATFVETLDTAIQLGAA 67 L R+A GA++RD R P + I +G A + +GG ++ + + AA Sbjct: 45 LAPRLAQGASERDQLRRWPVEEIEAYSQSGLWAINVPRAFGGAEVSYATLAEVIAIISAA 104 Query: 68 DPNVAHIWRNH--HVALERLLNAPLQHAGVQRLRERVRAGDLVGASHTELGQPQIGGNAP 125 DP++ I +NH VA R ++ P Q +R G G + +E G + A Sbjct: 105 DPSLGQITQNHLGFVAAVRTVSDPEQQ---RRFFADFLRGVRWGNAFSESGSKRA---AD 158 Query: 126 LATRLVRQGDHYVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREGVQTVDDWF 185 TR V GDH ++ G+KFYSTG+L A ++ + + E+ R V+ R G+ +DDW Sbjct: 159 FETRFVDAGDHVIVTGKKFYSTGALLAHYVPIVANDEENRTWYVVAERNAPGLTVIDDWS 218 Query: 186 GMGQRLTGSGTTIFENVVVAADEVVLPDQVPARQAVFGST----IAQLFLTSVIAGVVSA 241 GQR T SGT I + V V + +PA + + I Q+ +V G+ A Sbjct: 219 AFGQRTTLSGTVIIDQVKVPKTHL-----IPAYKGYLEPSADGAIFQIIQAAVDVGIARA 273 Query: 242 VARDGAALLGKRRRNYYYAPTPSAAQDPILLTALGERDADAFATRAVVLAAAVEADRAYA 301 D + + R + + A +DP + A+G+ A+ A++ A D A A Sbjct: 274 AIADTQDFVRTKSRPWIDSQRDHAWEDPYSIQAIGDLQIRLHASEALLERAGRAIDAAVA 333 Query: 302 ALKANAYDADDRLQDAAAAAARAKITVDRIAHHAATALFDIAGASATLAQFNLDRHWRNI 361 A A + + A A AK+ IA HA LF++AG +TL Q+NLDRHWRN Sbjct: 334 APDAQS------VAHAQILTAEAKVLSTEIAIHATNKLFELAGTRSTLGQYNLDRHWRNA 387 Query: 362 RTISTHNPTSHKAYALGNLSVNQVRLPTQGF 392 RT + H+P K +GN +N V+ P + Sbjct: 388 RTHTLHDPVRWKYAIVGNYYLNGVKPPFHAW 418 >gi|300314033|ref|YP_003778125.1| acyl-CoA dehydrogenase [Herbaspirillum seropedicae SmR1] Length = 411 Score = 157 bits (396), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 133/396 (33%), Positives = 196/396 (49%), Gaps = 21/396 (5%) Query: 4 ISPDLLQRIADGAAQRDAQREQPFDVIAEVKATGFGAGRLDADYGGGGATFVETLDTAIQ 63 ++ +L A AAQRD +R PF+ I +G A + +GG GA++ + Sbjct: 29 VAAELAAEFATSAAQRDRERILPFEQIERFSQSGLWAITVPRSHGGIGASWQTVAEVIRL 88 Query: 64 LGAADPNVAHIWRNHHVALERLLNAPLQHAGVQRLRERVRAGDLVGASHTELGQPQIGGN 123 + AADP++ I +NH L L A L QRL A L GA G P+ G Sbjct: 89 ISAADPSIGQIPQNHFGNLN--LIARLASQEQQRL---FFAEVLDGARLGNAG-PERNGK 142 Query: 124 APLATRLVRQGDH------YVLNGQKFYSTGSLFADWLHVTVSVEDGRRAVVLLPRQREG 177 L R D Y+LNG +FYSTG+L+A W+ +DG+ VV R G Sbjct: 143 NVLDVRTRATLDRAAGDGSYLLNGTRFYSTGALYAHWIPSRAIDDDGQPLVVYTRRDAPG 202 Query: 178 VQTVDDWFGMGQRLTGSGTTIFENVVVAADEVV-LPDQVPARQAVFGSTIAQLFLTSVIA 236 V+ +DDW GQR T SGT +F+NV V A +V+ L D + +Q ++QL ++ A Sbjct: 203 VRVIDDWSSFGQRTTASGTVVFDNVRVPATQVLALKDAL--QQPNNIGPVSQLIQAAIDA 260 Query: 237 GVVSAVARDGAALLGKRRRNYYYAPTPSAAQDPILLTALGERDADAFATRAVVLAAAVEA 296 G+ A +D A + R R Y + A+ DP +L +G A A++ AA Sbjct: 261 GIAHAAVQDTIAFVTTRSRPYVDSGLERASDDPYILRDIGNLSLRLHAADALLEDAAALL 320 Query: 297 DRAYAALKANAYDADDRLQDAAAAAARAKITVDRIAHHAATALFDIAGASATLAQFNLDR 356 D A L +++ A+AA A AK+ +A A+ LF+++G++ATLA NLDR Sbjct: 321 DSLPAQLSF------EQMAQASAAVAEAKVLSTELALLASEKLFELSGSAATLASHNLDR 374 Query: 357 HWRNIRTISTHNPTSHKAYALGNLSVNQVRLPTQGF 392 HWRN R + H+P K +A+GN ++N P + Sbjct: 375 HWRNARVHTLHDPVRWKYFAVGNYALNGTPPPRHSW 410 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,196,736 Number of extensions: 52618 Number of successful extensions: 206 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 199 Number of HSP's successfully gapped: 4 Length of query: 393 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 306 Effective length of database: 1,207,925 Effective search space: 369625050 Effective search space used: 369625050 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)