BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0002.p (284 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674... 238 5e-64 gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464... 229 2e-61 gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913... 187 8e-49 >gi|300311003|ref|YP_003775095.1| hypothetical protein Hsero_1674 [Herbaspirillum seropedicae SmR1] Length = 259 Score = 238 bits (606), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 113/257 (43%), Positives = 162/257 (63%), Gaps = 4/257 (1%) Query: 28 IAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYVLG 87 + IRVNQ+ +L +KYP Q E+ K+P G+ FY+ DW S+V+ H VT+PY+L Sbjct: 5 VEIRVNQSGVDLVKKYPDQFEITKYPQGIQFYAADWGSVPNGSVVLATSAHNVTLPYILS 64 Query: 88 ISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGAPR 147 +G DD + ENI W+I AG+T +++ HD+AR+ FF L+QS+R+AGW AI PR Sbjct: 65 ATGNDDPNFASENIINWNINAGITEADVIAHDDARKRFFGLLQSLRNAGWVRAIRLSEPR 124 Query: 148 LKGKDSLRYVQAAL-VGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRTD 206 LKGK +L Y Q + LDPDYV LE+WM L ++W Y+DHAY +++TRD ++TD Sbjct: 125 LKGKQALDYRQKENPIYSLDPDYVLSLEQWMTLDTRATWSLYSDHAYLDVSITRDPSKTD 184 Query: 207 IHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSXRLPEALALEQADRQQKEAEWQRK 266 + +PGAYF+ Y L ++NE+ R+ VGP R WKT LP L RQ E +++ Sbjct: 185 VTKPGAYFVEYALKSDNEKWRSVVGPTKRLHWKT---ELPAVLPQLAKSRQAAEETLKKE 241 Query: 267 GARIDRAYQDPPVPAIA 283 ID Y+DPP+P ++ Sbjct: 242 NITIDETYRDPPLPDLS 258 >gi|300310796|ref|YP_003774888.1| hypothetical protein Hsero_1464 [Herbaspirillum seropedicae SmR1] Length = 254 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 112/255 (43%), Positives = 155/255 (60%), Gaps = 3/255 (1%) Query: 26 EGIAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYV 85 E I I NQ+ L +YP Q+++ P +NFYS+DWPR+AL ++ + +H I V Sbjct: 3 ETIEITPNQSGKALLARYPHQIKLLNRPPNVNFYSLDWPRNALGTVQVKTGNHVAVIKDV 62 Query: 86 LGISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGA 145 LGISG+DD + E+I EWH+YAGL E + HD ARQ F L+Q IR AGW+ + RG Sbjct: 63 LGISGSDDPNFASEDIVEWHVYAGLATEEEIPHDLARQRFLALLQEIRKAGWQRYVGRGH 122 Query: 146 PRLKGKDSLRYVQAALVGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRT 205 PRLKG +LRY ++ LDPDY L+EWM + + W F ++AY + LTRD R Sbjct: 123 PRLKGSTALRYALSSRTYALDPDYPLSLQEWMSMPDDTMWRFQLENAYLMLTLTRDPQRK 182 Query: 206 DIHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSXRLPEALALEQADRQQKEAEWQR 265 D+++ GAYF+ L NEE R VGP R +W+ LPE L L + DR++ E ++ Sbjct: 183 DVNKKGAYFVKLSLNGANEEARRIVGPARRADWQAA---LPEELKLLKQDRERAEQVLRQ 239 Query: 266 KGARIDRAYQDPPVP 280 +G ID +YQDP +P Sbjct: 240 QGVAIDESYQDPKLP 254 >gi|300312218|ref|YP_003776310.1| hypothetical protein Hsero_2913 [Herbaspirillum seropedicae SmR1] Length = 284 Score = 187 bits (475), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 95/255 (37%), Positives = 140/255 (54%), Gaps = 4/255 (1%) Query: 27 GIAIRVNQAADELREKYPKQLEVAKHPAGLNFYSMDWPRDALASIVIGQPDHAVTIPYVL 86 IAIR N+ + ++ P ++V K PAG+NFY M W L + I +V IP V Sbjct: 31 SIAIRANEPSKAFIDQAPSAIKVIKQPAGINFYLMQWGGAQLGDVHIHHGAASVQIPDVR 90 Query: 87 GISGTDDTGYPEENISEWHIYAGLTAPELMGHDEARQAFFRLIQSIRDAGWRNAISRGAP 146 + G +D +PEE+I+ W IY GL++ +M H++AR + ++ ++ WR I P Sbjct: 91 VLQGEEDAQFPEEHIANWKIYIGLSSGSVMSHEQARNKIYAILAALEKKAWRVLIDPDDP 150 Query: 147 RLKGKDSLRYVQA-ALVGCLDPDYVPDLEEWMKLGAGSSWCFYADHAYFRINLTRDQNRT 205 RL GK+ YV + L+ DYVP L+EWM+L S W FYAD + + + RDQ Sbjct: 151 RLTGKERFDYVTGQSPASGLNIDYVPTLDEWMRLEDLSHWSFYADGVFLTVTMQRDQGAL 210 Query: 206 DIHQPGAYFLTYDLVAENEEMRAYVGPQNRREWKTLSXRLPEALALEQADRQQKEAEWQR 265 D+ +PG Y L +L+ ENE RA+V P+ R W+ LP R Q+EA+ Sbjct: 211 DVSRPGHYILVLNLMGENEGFRAFVPPKARTNWRN---ELPSLWKALNERRTQREAQALV 267 Query: 266 KGARIDRAYQDPPVP 280 G +I+ +YQDPP+P Sbjct: 268 AGKKINTSYQDPPLP 282 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 963,205 Number of extensions: 42790 Number of successful extensions: 110 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 105 Number of HSP's successfully gapped: 3 Length of query: 284 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 200 Effective length of database: 1,222,130 Effective search space: 244426000 Effective search space used: 244426000 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)