BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0001.p (261 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311644|ref|YP_003775736.1| taurine ABC transporter permeas... 455 e-129 gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate A... 144 1e-35 gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporte... 133 2e-32 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 114 8e-27 gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate A... 114 1e-26 >gi|300311644|ref|YP_003775736.1| taurine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 293 Score = 455 bits (1170), Expect = e-129, Method: Compositional matrix adjust. Identities = 244/261 (93%), Positives = 251/261 (96%) Query: 1 MRSFGIGEGATVRISVAAGIAILALWWLIAQTGWVPHLFLPTPSEVINVARSIWEDGYAN 60 MRSFGI EG+T RIS+AAGI ILALWWLIAQTGWVPHLFLPTP+EV+ VA+SIWEDGYAN Sbjct: 33 MRSFGIAEGSTARISIAAGIVILALWWLIAQTGWVPHLFLPTPAEVLKVAQSIWEDGYAN 92 Query: 61 ATLTEHVGASLLRILTAGVIAVSLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPL 120 ATL EHVGASLLRILTAGVIAV LGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPL Sbjct: 93 ATLAEHVGASLLRILTAGVIAVLLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPL 152 Query: 121 MIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPLERVNAALSLGATRWQLLVEIVLP 180 MIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLP ERVNAALSLGATRWQLL E+VLP Sbjct: 153 MIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRSLPQERVNAALSLGATRWQLLTEVVLP 212 Query: 181 SALPEILTGIRIALGVGWSTLVAAELIAANRGIGYMIMSASHFLATDAVFVGIALIAICA 240 SALPEILTGIRIALGVGWSTLVAAELIA+NRGIGYMIMSASHFLATDAVFVGIALIA CA Sbjct: 213 SALPEILTGIRIALGVGWSTLVAAELIASNRGIGYMIMSASHFLATDAVFVGIALIATCA 272 Query: 241 FVFSYGMRLLERALVPWKGKS 261 F FSYGMRLLERALVPWKGKS Sbjct: 273 FAFSYGMRLLERALVPWKGKS 293 >gi|300310817|ref|YP_003774909.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 256 Score = 144 bits (362), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 146/242 (60%), Gaps = 6/242 (2%) Query: 14 ISVAAGIAILALWWLIAQTGWVPHLFLPTPSEVINVARSIWEDGYANATLTEHVGASLLR 73 ISV A + L LW L++ T LFLP+ S A + DG TL + V AS R Sbjct: 17 ISVIAIVGGLVLWQLVSLT--TSPLFLPSVSMTWAAALELISDG----TLQQSVLASSGR 70 Query: 74 ILTAGVIAVSLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKI 133 IL V +G+P+G+ MG V+ +LD IEF+ +PP+A++ L +IWLG GE SKI Sbjct: 71 ILAGWGAGVVIGVPLGIFMGRFETVRQLLDPYIEFFRFIPPIAFVTLAVIWLGPGELSKI 130 Query: 134 TLLTLAMFAPVVLSAQAGVRSLPLERVNAALSLGATRWQLLVEIVLPSALPEILTGIRIA 193 L+ V L+ AGV+++ R+ AA SLGA +W++L ++LPS +P ++TG RIA Sbjct: 131 ALIFYTTVFIVTLNTIAGVQAVNPLRLRAAASLGAGQWKILSTVILPSTVPFMVTGARIA 190 Query: 194 LGVGWSTLVAAELIAANRGIGYMIMSASHFLATDAVFVGIALIAICAFVFSYGMRLLERA 253 +G + T+V+AE+++A G+G +I +A +F T+ VFVGI + I ++F +R+ R Sbjct: 191 MGNSFLTVVSAEIVSAREGLGALIWTARNFSRTEWVFVGIIALGILGYLFDRVLRVATRK 250 Query: 254 LV 255 L+ Sbjct: 251 LL 252 >gi|300310979|ref|YP_003775071.1| alkanesulfonates ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 279 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 92/235 (39%), Positives = 132/235 (56%), Gaps = 5/235 (2%) Query: 25 LWWLIA-QTGWVPHLFLPTPSEVINVARSIWEDGYANATLTEHVGASLLRILTAGVIAVS 83 +WW +A Q GW+ LP P V+ A WE A+ L H+ S R + + Sbjct: 45 VWWEVAAQAGWLSSRILPEPLAVLKAA---WELS-ASGELWRHLAVSSGRAASGFAVGAG 100 Query: 84 LGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAP 143 LG+ +GLL G R + +LDT ++ +P LA +PL+I+W GI E +K+ L+++ +F P Sbjct: 101 LGLILGLLSGSLRSAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVGVFFP 160 Query: 144 VVLSAQAGVRSLPLERVNAALSLGATRWQLLVEIVLPSALPEILTGIRIALGVGWSTLVA 203 V L+ G+RS+ + A S G + W L +++LP ALP IL G+R ALG+ W L+ Sbjct: 161 VYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPAILVGLRFALGLVWVLLIV 220 Query: 204 AELIAANRGIGYMIMSASHFLATDAVFVGIALIAICAFVFSYGMRLLERALVPWK 258 AE I+A GIGYM M+A FL TD V VGI L A+ + R LER + W Sbjct: 221 AETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARWLERFWLRWH 275 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 114 bits (285), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 77/253 (30%), Positives = 140/253 (55%), Gaps = 15/253 (5%) Query: 20 IAILALWWLIAQTGWVPHLFLPTPSEVINV--------------ARSIWEDGYANATLTE 65 I ++ALW ++ GW+ LP+P V+ A S ++ + + Sbjct: 17 IIVIALWEGASRAGWINPQILPSPWAVLRKWVEYATPLKPYDPEAGSWLAWAFSGELVMD 76 Query: 66 HVGASLLRILTAGVIAVSLGIPVGLLMGLNRWVKGVLDTPIEFYWPLPPLAYLPLMIIWL 125 +G SL R++ +I L +P+GLLMG ++ + G+++ ++ P+PP+AY+PL I+W Sbjct: 77 AIG-SLYRVVAGFLIGAGLALPLGLLMGSSQRIYGLMNLTVQVIRPIPPIAYIPLAILWF 135 Query: 126 GIGEASKITLLTLAMFAPVVLSAQAGVRSLPLERVNAALSLGATRWQLLVEIVLPSALPE 185 G+G + L++L F PV+++ AGVR + + AA +LGA++ L + ++LP+A+P Sbjct: 136 GLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQSTLFLRVMLPAAVPY 195 Query: 186 ILTGIRIALGVGWSTLVAAELIAANRGIGYMIMSASHFLATDAVFVGIALIAICAFVFSY 245 IL+G+RI +G + ++ AE+IA + G+G+ IM A + +D + G+ I + Sbjct: 196 ILSGVRIGIGTAFIVVIVAEMIAVSNGLGFRIMEAREYFWSDKIIAGMITIGLLGLAIDL 255 Query: 246 GMRLLERALVPWK 258 GM L ++ W Sbjct: 256 GMSRLNNYMLRWH 268 >gi|300309985|ref|YP_003774077.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 278 Score = 114 bits (284), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 72/224 (32%), Positives = 124/224 (55%), Gaps = 4/224 (1%) Query: 35 VPHLFLPTPSEVINVARSIWEDGYANATLTEHVGASLLRILTAGVIAVSLGIPVGLLMGL 94 +P LP PSE+ + S+ + G L H+ ASL R+ VI +L + +GLL+G+ Sbjct: 48 IPARLLPPPSELAHTLWSLAQRG----ELLPHIAASLARVAAGFVIGSALAVALGLLVGI 103 Query: 95 NRWVKGVLDTPIEFYWPLPPLAYLPLMIIWLGIGEASKITLLTLAMFAPVVLSAQAGVRS 154 +R + +L+ + +P LA++PL+++WLGI E K+ L+ + F PV L+ AG+R Sbjct: 104 SRRAEALLEPSFQALRAIPSLAWIPLLLLWLGIDETPKVVLIAIGAFFPVYLNLVAGIRD 163 Query: 155 LPLERVNAALSLGATRWQLLVEIVLPSALPEILTGIRIALGVGWSTLVAAELIAANRGIG 214 + + + + G L+ I+LP++LP + G+R L + W LVAAELIAA +G+G Sbjct: 164 IDHKLIEVGTTSGLNTQALIGHILLPASLPYLFAGLRGGLSLAWMFLVAAELIAATKGVG 223 Query: 215 YMIMSASHFLATDAVFVGIALIAICAFVFSYGMRLLERALVPWK 258 Y++ D V I ++A+ + +R +E+ + W+ Sbjct: 224 YLLSDGRESSRPDLVLAAILILALLGKLSDGLLRAVEQKSLGWR 267 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.435 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 774,055 Number of extensions: 30954 Number of successful extensions: 255 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 244 Number of HSP's successfully gapped: 18 Length of query: 261 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 178 Effective length of database: 1,226,865 Effective search space: 218381970 Effective search space used: 218381970 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)