BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0106.p (519 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor trans... 491 e-140 gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor trans... 458 e-130 gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor trans... 409 e-115 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 284 1e-77 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 284 1e-77 >gi|300312376|ref|YP_003776468.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 493 Score = 491 bits (1263), Expect = e-140, Method: Compositional matrix adjust. Identities = 270/496 (54%), Positives = 356/496 (71%), Gaps = 9/496 (1%) Query: 21 MSTTNVHSHITYANAAFIAVSGFSREQIAGQPHNLVRHPDMPQQAFADMWKTLQAGRSWT 80 MS+T+ S +TYAN++F+ VSGF REQ+ GQPHN+VRHPDMP++AFADMW TL+ G +WT Sbjct: 1 MSSTDTSSVLTYANSSFVEVSGFHREQLIGQPHNIVRHPDMPREAFADMWATLRRGDAWT 60 Query: 81 ALVKNRRSDGDHYWVRANVTPITRNGRVSGYMSVRTKPTSSEIEQSETLYKAFRENRARG 140 A+VKNRR+DG HYWVRANVTPI R G ++G++SVRT+P EI + LY+ FRE RARG Sbjct: 61 AVVKNRRADGRHYWVRANVTPIRRGGGITGFLSVRTQPAPHEIRAAAALYRRFREGRARG 120 Query: 141 LAFEQGLIVRTGWLSWTTISKKLSVRWRLRFGM---GLPLIASGIATLLVTHSNTPPIGL 197 L F GL+VR+G L WT + + L VRWRLR + GL +A GI + P + Sbjct: 121 LRFCHGLVVRSGLLGWTRLEQVLPVRWRLRLALAAGGLTALAGGIL------AGAPLAPM 174 Query: 198 FACLAISAVFSCLWMERKIARPLGLVLRQSLAVAAGQPGENVYLERIDEIGMILRAVNQS 257 A + +CLW+ER++A PL LVL+Q+ AVA GQP + L+RIDEIG++LRAVNQS Sbjct: 175 AASVLPPLALACLWLERRLAAPLELVLQQAKAVACGQPAQTQGLDRIDEIGLLLRAVNQS 234 Query: 258 GLNLRSLVDDVNEQVTGVQIASSEISQGNHNLSGRTEQTASNLQETASSMEQIAANVSNN 317 GLNLR+L+DDV QV G++ AS +I+ N +L RT T + LQ+TAS+ EQ+A V ++ Sbjct: 235 GLNLRALIDDVAAQVQGLEQASRQIASDNADLRQRTADTHAQLQQTASAAEQMATAVRHS 294 Query: 318 ADSARQAAELATGASTLASRGGEVVRDVVHTMQAISQSSQQIADIIGVIDAIAFQTNILA 377 ADSA+ A A S A++G ++V VV TM I+ +S +I +I G+ID+IAFQTNILA Sbjct: 295 ADSAQAAHAQARQTSQAAAQGRDIVTQVVQTMHQIADASGRIGEINGLIDSIAFQTNILA 354 Query: 378 LNAAVEAARAGEQGRGFAVVASEVRNLAGRSADAAKEIKLLIGDSVSKVQAGMQQAEHAG 437 LNAAVEAARAGE GRGFAVVA+EVR LA RSA AA+EIK LI SV + QAG Q+AE A Sbjct: 355 LNAAVEAARAGEAGRGFAVVAAEVRTLAQRSASAAREIKALIAHSVGQSQAGAQRAEQAA 414 Query: 438 QAMQEIVAEVQRVTHLIGEISQATTEQAMGIGQVNIAVAQLEQMTQQNAALVEQSAAAAE 497 A++ IVA+ Q ++ LIG IS + EQ+ G+ QV+ + L+ MTQQNAA+VE SAAA Sbjct: 415 AAIESIVAQAQDMSTLIGAISTSAVEQSQGVSQVSQSALMLDGMTQQNAAMVEHSAAAVA 474 Query: 498 SLRGQADRLAEAVSVF 513 +++ + L +AV+VF Sbjct: 475 AMQQRMQTLQQAVAVF 490 >gi|300309789|ref|YP_003773881.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 520 Score = 458 bits (1178), Expect = e-130, Method: Compositional matrix adjust. Identities = 249/517 (48%), Positives = 338/517 (65%), Gaps = 4/517 (0%) Query: 1 MKLNLPVTQRAYDFPANVTLMSTTNVHSHITYANAAFIAVSGFSREQIAGQPHNLVRHPD 60 M++N+PVT + ++S T++ +ITY N FI +SGF ++ G P NL+RHPD Sbjct: 1 MRMNMPVTGQERLLIDGKAIVSKTDLKGNITYVNPYFIEISGFEENELLGAPQNLIRHPD 60 Query: 61 MPQQAFADMWKTLQAGRSWTALVKNRRSDGDHYWVRANVTPITRNGRVSGYMSVRTKPTS 120 MP +AFADMW T++ G WT LVKNR +GDHYWVRANVTPI NG++ GYMSVRTKP Sbjct: 61 MPAEAFADMWATIKGGTPWTGLVKNRSKNGDHYWVRANVTPIRENGQIVGYMSVRTKPER 120 Query: 121 SEIEQSETLYKAFRENRARGLAFEQGLIVRTGWLSWTTISKKLSVRWRLRFGMGLPL--- 177 + +E LY + R +A+G+A +G +VRTG W ++ + RL MG+ L Sbjct: 121 DAVAGAEKLYASIRRGQAKGIALHRGEVVRTGLAGWLGKLSRMQLNSRLNLSMGIMLAIQ 180 Query: 178 IASGIATLLVTHSNTPPIGLFACLAISAVFSCLWMERKIARPLGLVLRQSLAVAAGQPGE 237 +A +A + H A +S + + + + +PL L + A+ G Sbjct: 181 LAVVVAGMAALHQWWISALAAAAALLS-IVQWIALRNALIKPLHQALDITHAITGGDLSV 239 Query: 238 NVYLERIDEIGMILRAVNQSGLNLRSLVDDVNEQVTGVQIASSEISQGNHNLSGRTEQTA 297 + R DE+G +LR++ Q +NL +++ DV V + +A+ EI+ GN +LS RTE A Sbjct: 240 RIETTRHDELGRLLRSLRQMNVNLTAIIGDVRSNVETITLATREIASGNLDLSRRTEAQA 299 Query: 298 SNLQETASSMEQIAANVSNNADSARQAAELATGASTLASRGGEVVRDVVHTMQAISQSSQ 357 +NL+ETASSM ++A+ V NAD A QA +LA AS +A RGG+ V TM IS+SS Sbjct: 300 ANLEETASSMHELASTVRQNADHAVQANDLAGTASAIAMRGGDAVASTGTTMNEISESSH 359 Query: 358 QIADIIGVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAGRSADAAKEIKL 417 +I DII +ID+IAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAKEIK Sbjct: 360 KIVDIISLIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKE 419 Query: 418 LIGDSVSKVQAGMQQAEHAGQAMQEIVAEVQRVTHLIGEISQATTEQAMGIGQVNIAVAQ 477 LI SV KV G +Q E A M++IVA VQRV+ ++GEI +AT +Q+ GI QV+ A+ Q Sbjct: 420 LIDASVEKVDIGNRQVEQATSTMRDIVASVQRVSGIMGEIKEATQQQSAGINQVHEAITQ 479 Query: 478 LEQMTQQNAALVEQSAAAAESLRGQADRLAEAVSVFR 514 ++ TQQNA+LVE++AAAA SL+ Q RL +A+SVF+ Sbjct: 480 MDASTQQNASLVEEAAAAAGSLQEQTVRLLQAISVFK 516 >gi|300309849|ref|YP_003773941.1| aerotaxis sensor receptor transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 409 bits (1052), Expect = e-115, Method: Compositional matrix adjust. Identities = 242/526 (46%), Positives = 337/526 (64%), Gaps = 7/526 (1%) Query: 1 MKLNLPVTQRAYDFPANVTLMSTTNVHSHITYANAAFIAVSGFSREQIAGQPHNLVRHPD 60 M+ NLP+T +++S T++ +I Y N FI +SGF E++ G P N+VRHP+ Sbjct: 1 MRKNLPITTTERLLEDGKSIVSKTDLQGNILYVNPYFIEISGFEEEELIGAPQNIVRHPE 60 Query: 61 MPQQAFADMWKTLQAGRSWTALVKNRRSDGDHYWVRANVTPITRNGRVSGYMSVRTKPTS 120 MP++AFADMW TL+ G W LVKNR +GD+YWV+ANVTP+ NGR GYMSVRT+P+ Sbjct: 61 MPREAFADMWATLKEGLPWNGLVKNRCKNGDYYWVQANVTPVRENGRAVGYMSVRTRPSR 120 Query: 121 SEIEQSETLYKAFRENRARGLAFEQGLIVRTGWLSWTTISKKLSVRWRLRFGMG----LP 176 +++ +E Y+ F +ARGL +G +VRTG W ++L V RL + MG + Sbjct: 121 EQVQAAEAAYRKFSAGQARGLRVHRGAVVRTGLTGWLQGLRELPVARRLGWTMGVLTLMF 180 Query: 177 LIASGIATLLVTHSNTPPIGLFACLAISAVF---SCLWMERKIARPLGLVLRQSLAVAAG 233 ++ +A V + P ++ A A+ S + I PL ++ +A G Sbjct: 181 ILGGAVAGNAVMSAGGSPFAVWLGTAAGALMLLASWAMLHASIVAPLQRAIKAVHGLAGG 240 Query: 234 QPGENVYLERIDEIGMILRAVNQSGLNLRSLVDDVNEQVTGVQIASSEISQGNHNLSGRT 293 ++ ++G++L+A+ Q +NLR+++ DV V + I++ EI+ GN +LSGRT Sbjct: 241 DLDSHIDTTARGDMGLLLQALQQLNVNLRAIIGDVRRNVESMTISTGEIANGNMDLSGRT 300 Query: 294 EQTASNLQETASSMEQIAANVSNNADSARQAAELATGASTLASRGGEVVRDVVHTMQAIS 353 E AS L+ETASS+E+ AA V NADSA A A AS +A RGG V+ + TM+ I Sbjct: 301 EAQASALEETASSVEEFAATVRQNADSAANADRQAQSASAIAQRGGSSVQRMGRTMEEID 360 Query: 354 QSSQQIADIIGVIDAIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAGRSADAAK 413 +S +I DIIG+ID I+FQTNILALNAAVEAARAGEQGRGFAVVA+EVR LA RSA AAK Sbjct: 361 AASHKIVDIIGLIDGISFQTNILALNAAVEAARAGEQGRGFAVVAAEVRTLAQRSAAAAK 420 Query: 414 EIKLLIGDSVSKVQAGMQQAEHAGQAMQEIVAEVQRVTHLIGEISQATTEQAMGIGQVNI 473 +IK LI DS +KV++G Q QAM E+ V+ + + EI+ A+ EQ+ GI Q+N Sbjct: 421 DIKGLIDDSRAKVESGNQLVRETAQAMGELGGAVENMAVTMAEITVASNEQSGGIEQLNQ 480 Query: 474 AVAQLEQMTQQNAALVEQSAAAAESLRGQADRLAEAVSVFRGSTEV 519 AV +++ TQQNAALVEQ+AAAAE+LR QA +L++AVSVF+ S V Sbjct: 481 AVNAIDETTQQNAALVEQAAAAAENLRDQAVKLSQAVSVFKISYAV 526 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 284 bits (727), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 177/323 (54%), Positives = 228/323 (70%), Gaps = 6/323 (1%) Query: 195 IGLFACLAISAVFSCLWMERKIARPLGLVLRQSLAVAAGQPGENVYLERIDEIGMI---L 251 +GL A + A + ++RPL ++ + VA G + DE G + L Sbjct: 194 VGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRPAGRDETGALMEAL 253 Query: 252 RAVNQSGLNLRSLVDDVNEQVTGVQIASSEISQGNHNLSGRTEQTASNLQETASSMEQIA 311 RA+N+S LR +V +V + + AS EI++GN +LS RTEQ A +L+ETAS+ME++ Sbjct: 254 RAMNES---LRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLEETASAMEELT 310 Query: 312 ANVSNNADSARQAAELATGASTLASRGGEVVRDVVHTMQAISQSSQQIADIIGVIDAIAF 371 + V+ NAD+ARQA +LA AS +AS+GGEVV VV TM+ I++SS++IADII VID IAF Sbjct: 311 STVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIADIISVIDGIAF 370 Query: 372 QTNILALNAAVEAARAGEQGRGFAVVASEVRNLAGRSADAAKEIKLLIGDSVSKVQAGMQ 431 QTNILALNAAVEAARAGEQGRGFAVVASEVR+LA RSA AAKEIK LI DSV KV AG Sbjct: 371 QTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDDSVQKVSAGSA 430 Query: 432 QAEHAGQAMQEIVAEVQRVTHLIGEISQATTEQAMGIGQVNIAVAQLEQMTQQNAALVEQ 491 E AG M E+VA V+RVT ++ EIS AT EQ+ GI +VN+A+ Q+++ TQQNAALVEQ Sbjct: 431 LVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDETTQQNAALVEQ 490 Query: 492 SAAAAESLRGQADRLAEAVSVFR 514 +AAAA+SL+GQA LA V F+ Sbjct: 491 AAAAADSLKGQASNLAAVVGKFK 513 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 284 bits (726), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 218/306 (71%) Query: 211 WMERKIARPLGLVLRQSLAVAAGQPGENVYLERIDEIGMILRAVNQSGLNLRSLVDDVNE 270 ++ I +PL + S VA G + + DE G +L+++ +LR +V +V Sbjct: 210 YLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSRDETGQLLQSLKDMNQSLRGIVSNVRS 269 Query: 271 QVTGVQIASSEISQGNHNLSGRTEQTASNLQETASSMEQIAANVSNNADSARQAAELATG 330 + ASSEI+ GN +LS RTEQ AS+L ETAS+ME++ + V NAD+ARQA++LA Sbjct: 270 GTDTISTASSEIAAGNLDLSSRTEQQASSLAETASAMEELISTVRQNADNARQASQLANS 329 Query: 331 ASTLASRGGEVVRDVVHTMQAISQSSQQIADIIGVIDAIAFQTNILALNAAVEAARAGEQ 390 AS +A +GG VV VV TM AI+ SS++I DII VID IAFQTNILALNAAVEAARAGEQ Sbjct: 330 ASAVAEQGGGVVSQVVDTMGAINASSRKIVDIISVIDGIAFQTNILALNAAVEAARAGEQ 389 Query: 391 GRGFAVVASEVRNLAGRSADAAKEIKLLIGDSVSKVQAGMQQAEHAGQAMQEIVAEVQRV 450 GRGFAVVASEVR LA RSA AAKEIK LI DSV KV G + E AG MQE+V+ V+RV Sbjct: 390 GRGFAVVASEVRTLAQRSASAAKEIKELINDSVGKVDDGSRLVEQAGNTMQEVVSSVRRV 449 Query: 451 THLIGEISQATTEQAMGIGQVNIAVAQLEQMTQQNAALVEQSAAAAESLRGQADRLAEAV 510 T ++ EIS A+TEQ GI Q+N+A+ Q++Q+TQQNAALVE++AAAA S++ QA RL + V Sbjct: 450 TDIVAEISAASTEQTHGIEQINLAITQMDQVTQQNAALVEEAAAAAASMQTQAGRLMQMV 509 Query: 511 SVFRGS 516 SVFR S Sbjct: 510 SVFRLS 515 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.316 0.127 0.350 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,335,576 Number of extensions: 50876 Number of successful extensions: 538 Number of sequences better than 1.0e-08: 69 Number of HSP's gapped: 359 Number of HSP's successfully gapped: 70 Length of query: 519 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 430 Effective length of database: 1,198,455 Effective search space: 515335650 Effective search space used: 515335650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)