BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0104.p
         (811 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313869|ref|YP_003777961.1| superfamily II helicase [Herbas...  1246   0.0  

>gi|300313869|ref|YP_003777961.1| superfamily II helicase
           [Herbaspirillum seropedicae SmR1]
          Length = 829

 Score = 1246 bits (3225), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/828 (80%), Positives = 721/828 (87%), Gaps = 18/828 (2%)

Query: 1   MAASPFFIGRMPASPFSSAFHPRLTLQTLTRGEGLLGMRAHGLFGPRGGMVTVAQIDWVY 60
           MAAS     RM +SP  SAFHPRLTLQTLTRG+GLLGMRAHGLFGPRGGMVTVAQIDWVY
Sbjct: 1   MAASLISPARMASSPTVSAFHPRLTLQTLTRGDGLLGMRAHGLFGPRGGMVTVAQIDWVY 60

Query: 61  GDGAQRWSMPAPVGHPDDEAGYTPAHVTRNHAAEAAALESIREMGLLPLREDALQWRAEN 120
           G GAQ WS PAP     D+  YTPAH+ R+H AEAAALE IRE+GLLPLREDALQWRA N
Sbjct: 61  GQGAQGWSTPAPTSPNGDQPDYTPAHIQRDHQAEAAALEDIRELGLLPLREDALQWRAHN 120

Query: 121 PLHDAGPLWTLMLEDSFGDFWADQAPRLQQQGWTLRVRPGFAHESVPVTAWRFIVSSENG 180
           PLHDAGPLWTL+ E+ FGDFWADQAPRLQ QGW LR RPGFAHESVPVTAWRFIVSS+ G
Sbjct: 121 PLHDAGPLWTLVQEEFFGDFWADQAPRLQAQGWILRARPGFAHESVPVTAWRFIVSSQTG 180

Query: 181 ELSAREVAAPLQPRAFSSEIFDGLDPSGRWLLAMGIEVDGQTLDVAPMVADLLRRDPRWA 240
           E+  REVAAPL PRAFSSE+FDGLDPSGRWLLA+GIEV+GQ++DVAPMVADLLRRDPRW 
Sbjct: 181 EVINREVAAPLTPRAFSSEVFDGLDPSGRWLLAIGIEVEGQSMDVAPMVADLLRRDPRWG 240

Query: 241 DAQQVERMDSHAVISLRAPGGRRIDAMAGPLKAVVLSLLDLLVDLKRKDGPLQLSPWDAH 300
           DAQQVERMD HAVISLRAPGGRRIDAMAGPLKAVVL+LLDLLVDL RKDGPL+L+PWDAH
Sbjct: 241 DAQQVERMDPHAVISLRAPGGRRIDAMAGPLKAVVLALLDLLVDLGRKDGPLRLTPWDAH 300

Query: 301 RLDSLQADLQALQGGAPWYMSGAAGVLQLAQRLRAAGSVQPVAPPAGLGLTLRGYQLQGV 360
           R+D LQA LQ L+G  PW++SGA G+L LA+RLRAAGSV PV  P GLGLTLR YQ  GV
Sbjct: 301 RIDGLQAALQGLEGATPWHISGADGLLALARRLRAAGSVAPVPQPDGLGLTLRDYQRYGV 360

Query: 361 AWMQYLRQHGLAGILADDMGLGKTAQVLAHLLIEQQAGRLDLPALVVVPTSLLFNWQQEA 420
           AWMQYLR HGLAGILADDMGLGKTAQVLAH+LIE+QAGRLDLP LVV PTSLLFNWQQEA
Sbjct: 361 AWMQYLRTHGLAGILADDMGLGKTAQVLAHVLIEKQAGRLDLPVLVVAPTSLLFNWQQEA 420

Query: 421 QRIAPALRVQVLHGEDRARHVSAIAQGQADLVLTTYPLLWRDLDLLLSLRFHLLVLDEAQ 480
           +RI P LRV +LHG++RA+H SA+A GQ DLVLT+YPLLWRDLD LL  R+H+LVLDEAQ
Sbjct: 421 RRITPDLRVLLLHGQERAQHFSALASGQVDLVLTSYPLLWRDLDQLLPQRWHMLVLDEAQ 480

Query: 481 TIKNAAARSTAAARRLHARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRK 540
           T+KNAA+RS AAARRL ARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRK
Sbjct: 481 TVKNAASRSAAAARRLQARHRLCMTGTPLENHLGELWSQFHFLMPGFLGDARSFARLWRK 540

Query: 541 PIEQQGWGF----------------XKQDVLQELPPRIEIVERLQLQGRQRELYESVRIA 584
           PIE+QG                    KQDVLQELPPR EI+ERL LQGRQRELYESVR+A
Sbjct: 541 PIEEQGQTVRARLLAQRVRPFILRRRKQDVLQELPPRSEIIERLPLQGRQRELYESVRMA 600

Query: 585 ADKQVRRALERRGLGSSQVSVMDALLKLRQVCCDPYLLKQGRMPRGLERAKIEWLRDTLP 644
           ADKQVRRALERRGLG SQV+VMDALLKLRQVCCDPYLLKQGRMP+GLERAKI+WL DTLP
Sbjct: 601 ADKQVRRALERRGLGGSQVTVMDALLKLRQVCCDPYLLKQGRMPKGLERAKIDWLCDTLP 660

Query: 645 ALVEEGRRILLFSQFTSMLTLIEAELQALQLPCLMLTGDTEPAARSGVISRFQQGDVPLM 704
           ALV EGRRIL+FSQFT ML LI A+L+ LQLP LMLTG+TEPAAR+ VI+ FQQ   PLM
Sbjct: 661 ALVAEGRRILVFSQFTGMLKLIAAQLEPLQLPYLMLTGETEPAARADVIAGFQQEQTPLM 720

Query: 705 LVSLKVGGVGLNLTAADTVVLADPWWNPAVEEQAIARAHRLGQTRQVFVYKLVIEGSIEE 764
           LVSLK GGVGLNLTAADTVVL DPWWNPAVEEQAIARAHRLGQ RQVFVYKLVIEGSIEE
Sbjct: 721 LVSLKAGGVGLNLTAADTVVLVDPWWNPAVEEQAIARAHRLGQQRQVFVYKLVIEGSIEE 780

Query: 765 RLLELQTRKSALAEGMLGRDDTATIKFGEEELQALLAPL--GITERTL 810
           RLLELQ RKSALAEGMLGRDD  T+KFGEEELQALLAPL  GI E+ L
Sbjct: 781 RLLELQARKSALAEGMLGRDDATTVKFGEEELQALLAPLGAGIAEKIL 828


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,552,289
Number of extensions: 114173
Number of successful extensions: 370
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 369
Number of HSP's successfully gapped: 1
Length of query: 811
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 718
Effective length of database: 1,179,515
Effective search space: 846891770
Effective search space used: 846891770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 135 (56.6 bits)