BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0095.p
         (556 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313876|ref|YP_003777968.1| membrane-associated, metal-depe...   862   0.0  

>gi|300313876|ref|YP_003777968.1| membrane-associated,
           metal-dependent hydrolase [Herbaspirillum seropedicae
           SmR1]
          Length = 556

 Score =  862 bits (2226), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/554 (76%), Positives = 483/554 (87%)

Query: 1   LEKLVKRLGLGLIGLVFFWALDRISANELAKSSVLMATALPGIAGLFLVLPWWRERPHWF 60
           ++KL+ RL LGL GL  FW L  IS NELAKSSVLMATALPGIAGLFL++PW R RP  F
Sbjct: 1   MKKLINRLLLGLGGLAVFWGLGMISGNELAKSSVLMATALPGIAGLFLIIPWCRRRPGLF 60

Query: 61  SRAALVIIGVFFLDAAIKGFLRDYFGLRPNPILVLQAIFNTNPAESSEFFRHNGRDLGEA 120
           S A+L+IIG+FFLDAA+KGFLRDYFGLRPNP+LVLQAIFNTNPAESSEFFRHN RD+ +A
Sbjct: 61  STASLLIIGLFFLDAALKGFLRDYFGLRPNPVLVLQAIFNTNPAESSEFFRHNWRDVAQA 120

Query: 121 LGLLLLAWTGLWLGERWLRRREQGQPAAPWRWRGRAAVGCLLAVFVALHFNPTMAKENPL 180
           +   ++  +  WLGERWL RRE  Q AAPWR RG A VG LLAVFVALHFNPTMAKENPL
Sbjct: 121 VLAFVVMMSLAWLGERWLARREARQAAAPWRARGVAGVGLLLAVFVALHFNPTMAKENPL 180

Query: 181 LFWPIRYLDYREQLAQAASMEADVARNMAHRSDWQVRYAGPERNTVVWIIGESLNRANMS 240
           LFWPIRYL+Y+ Q  QA SME ++A NMA  + WQV YAGP+RNT+VW+IGESLNRANMS
Sbjct: 181 LFWPIRYLEYQAQTEQARSMEQNIASNMAQSAQWQVHYAGPQRNTLVWVIGESLNRANMS 240

Query: 241 LYGYERHTSPTLEAMRKELIVFRDVVSSEPATMASLMKMLTPADLNDPQAWNRKPDVLML 300
           LYGYER T+P L+AMR++L+VFRDVVSSEPATM SLMKMLTPADL+DP AW+RKPDV+ML
Sbjct: 241 LYGYERQTTPLLDAMRRDLLVFRDVVSSEPATMGSLMKMLTPADLDDPHAWSRKPDVVML 300

Query: 301 AREAGFRIHWLSNQPPNDGWLGLVSRRADEQVFINKGAGRGENNFDGNLLPALDTALHDP 360
           AREAGFR+ WLSNQ PNDGWLG+VSRRAD+QVFINKGAGRGENNFDGNLLP L+ AL DP
Sbjct: 301 AREAGFRVIWLSNQVPNDGWLGVVSRRADQQVFINKGAGRGENNFDGNLLPGLEAALQDP 360

Query: 361 SPKKLIVVHLLGAHPTYDMRYPSQYARFDTVRDGVTEKLEDADRSAWIRQLRNEYDNAMA 420
           +PKKLIVVHLLGAHPTYDMRYPS YARFD VRDGVT+KLE+ADRS WIRQLRNEYDNA+A
Sbjct: 361 APKKLIVVHLLGAHPTYDMRYPSDYARFDGVRDGVTQKLENADRSPWIRQLRNEYDNAIA 420

Query: 421 YNDYVVGSMLKLTMNAARQDHASLLFSSDHAQEVGHTRNHAGQSVSDATGYEIPMLAWTR 480
           YNDYVVG+ML+LTM  A +D+ASL+FSSDHAQEVGHTR+HAGQS SD +GYEIPML WTR
Sbjct: 421 YNDYVVGNMLRLTMRTAPEDNASLVFSSDHAQEVGHTRDHAGQSASDPSGYEIPMLLWTR 480

Query: 481 SFTGKSPEDKARLEYRPYQTDQLEHTIMGLMGVQSRYYDARHDILSEQFGSGNFHQQRRI 540
           SF GKS E++A+LE+RPYQTDQ+EHTI+GL+GV+S YYDA  DILS+ F +  FH  RRI
Sbjct: 481 SFIGKSSEERAQLEHRPYQTDQMEHTILGLLGVRSVYYDAHRDILSDSFHAPPFHGLRRI 540

Query: 541 NGQPYLPRTVTYNQ 554
           NGQPYLPRTV YNQ
Sbjct: 541 NGQPYLPRTVPYNQ 554


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,717,335
Number of extensions: 71492
Number of successful extensions: 217
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 1,619,870
Length adjustment: 90
Effective length of query: 466
Effective length of database: 1,193,720
Effective search space: 556273520
Effective search space used: 556273520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)