BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0093.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane h...   150   8e-38

>gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score =  150 bits (378), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/112 (68%), Positives = 84/112 (75%), Gaps = 5/112 (4%)

Query: 89  RVDAALGVDDPGFRYLLSTGPSRQVWVKLSAQYRNGGSEGDFGPDRLLWGSDWPXLLRQH 148
           RVDAALGVDDPGFRYLLS+    QVWVKLSA YRNGG+E      R      WP LLR+H
Sbjct: 169 RVDAALGVDDPGFRYLLSSAAGGQVWVKLSASYRNGGAEQGQRFAR----QAWP-LLREH 223

Query: 149 FGPDRLLWGSDWPHTQHESMTSYADSWRRFESLVSDEADRRCITGETAAQLF 200
           FG  RLLWGSDWPHTQHES+T Y  SW++F  LVSDE  RR ITG+TAAQLF
Sbjct: 224 FGAQRLLWGSDWPHTQHESLTDYGHSWQQFTQLVSDEEQRRIITGQTAAQLF 275



 Score =  134 bits (338), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/93 (69%), Positives = 71/93 (76%)

Query: 1  MSTSAVLSTPALRIDTHAHVFARGLPMADVRRYTPAYDVTVEEYLARLDAHGMSHGVLVQ 60
          MS         LRIDTHAHVF R LP+ADVRRY P YDVTVE+Y+ARLD HGMSHGVLVQ
Sbjct: 1  MSQPCATPATVLRIDTHAHVFTRDLPLADVRRYAPTYDVTVEQYIARLDTHGMSHGVLVQ 60

Query: 61 PSFLGCDNSYLLQAIARAPQRLRGIALXRVDAA 93
          PSFLG DN YLL A+AR PQRLRGIA+   D +
Sbjct: 61 PSFLGSDNRYLLAALARYPQRLRGIAMVDADVS 93


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.136    0.434 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 714,622
Number of extensions: 32075
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 2
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)