BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0085.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313885|ref|YP_003777977.1| GntR family transcription regul... 389 e-109 gi|300312446|ref|YP_003776538.1| GntR family transcription regul... 118 4e-28 gi|300313520|ref|YP_003777612.1| transcription regulator protein... 109 2e-25 gi|300311570|ref|YP_003775662.1| GntR family transcription regul... 107 6e-25 gi|300312368|ref|YP_003776460.1| GntR family transcription regul... 106 1e-24 >gi|300313885|ref|YP_003777977.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 389 bits (998), Expect = e-109, Method: Compositional matrix adjust. Identities = 197/234 (84%), Positives = 210/234 (89%) Query: 6 PPSPDSSHRGQLSRSEHICKQIIASILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 PPS +S +LSRSEHIC+QIIA+ILRGELGENRKLPTEVELAQRYEASRTTVREALSR Sbjct: 6 PPSLAASRTHRLSRSEHICRQIIAAILRGELGENRKLPTEVELAQRYEASRTTVREALSR 65 Query: 66 LRSEGIVVSRRGSGNYVQRLPVLQSSAPAQIASIPDVERYYAFRACVEVGAAGIAATARE 125 LRSEGIVVSRRGSGNYVQRLP L S QIASI DVERYYAFR CVEVGAAGIAATAR+ Sbjct: 66 LRSEGIVVSRRGSGNYVQRLPTLSSQGSPQIASIHDVERYYAFRECVEVGAAGIAATARQ 125 Query: 126 EEDIALMRHCLQALRRAQLQGQTGVEEDLALHMAIARATRNPFFISTIEHALGPIRQCME 185 +ED+ MR LQAL+RAQL+GQTGV+EDLALHMAIARATRNPFFISTIEHALGPIRQCME Sbjct: 126 DEDVQAMRIALQALQRAQLEGQTGVDEDLALHMAIARATRNPFFISTIEHALGPIRQCME 185 Query: 186 LAQNLGSPQESKRIQVIDDEHQAIIDAIAQGSAQDAEAAMRAHIGHARQRIFEG 239 LAQNLGSPQ+ +RIQ IDDEHQAII AIA+GS AEAAMRAHIGHAR RIFEG Sbjct: 186 LAQNLGSPQDGERIQTIDDEHQAIIQAIAEGSPARAEAAMRAHIGHARLRIFEG 239 >gi|300312446|ref|YP_003776538.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 255 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 9/225 (4%) Query: 18 SRSEHICKQIIASILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRG 77 S S+ + + A I G L KLPTE E+ Q SRT VREA+SRL++ G+V +R G Sbjct: 19 SLSQEVVAALTAMISNGSLTPGDKLPTESEIMQTQGVSRTVVREAISRLQAAGLVETRHG 78 Query: 78 SGNYVQRLPVLQSSA----PAQIASIPDVERYYAFRACVEVGAAGIAATAREEEDIALMR 133 G +V L + PA I ++ D+ R +E AG+AA R EE + +R Sbjct: 79 IGTFV--LEAKKGGNINIDPATITTMRDLLALLELRISLETETAGLAAARRTEEQLQEIR 136 Query: 134 HCLQALRRAQLQGQTGVEEDLALHMAIARATRNPFFISTIEH-ALGPI-RQCMELAQNLG 191 L R Q G V D H AIA AT N +FI I H +G I R+ + A+ L Sbjct: 137 EALDLFRANQQGGGDTVGPDFRFHFAIANATGNRYFIEIISHLGMGVIPRKRINTAE-LA 195 Query: 192 SPQESKRIQVIDDEHQAIIDAIAQGSAQDAEAAMRAHIGHARQRI 236 Q++ + + EH+ I +AIA+G A+ A AAMR H+ ++R+R+ Sbjct: 196 HDQQASYLDRVQREHEDIYEAIARGDAEAARAAMRNHLTNSRERL 240 >gi|300313520|ref|YP_003777612.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 233 Score = 109 bits (272), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 21/232 (9%) Query: 20 SEHICKQIIASILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 S+ + +Q++ +I G KLPTE LAQ++ SRT VREA++RL+ EG+V R+GSG Sbjct: 11 SDTVARQLLENIDAGAFPRGSKLPTEAVLAQQFGVSRTVVREAIARLKHEGVVEPRQGSG 70 Query: 80 NYVQ--------RLPVLQSSAPAQIASIPDVERYYAFRACVEVGAAGIAATAREEEDIAL 131 +V R+ + S+P + I ++ R +E A AA R ED+ Sbjct: 71 VFVTEQAGIKPLRIDYTEVSSPEAVLQIVELRR------AIEAEVAAQAAKRRSAEDLQA 124 Query: 132 MRHCLQALRRAQLQGQTGVEEDLALHMAIARATRNPFFISTIEHALGPIRQCMELAQNLG 191 + L + G GV D+A H A+A+ATRNP+FI T+E + Q +E A + Sbjct: 125 IEAALAQIGVDVAAGGDGVAADVAFHRALAQATRNPYFIKTLEF----LSQYLEAATAVT 180 Query: 192 SPQESKRIQV---IDDEHQAIIDAIAQGSAQDAEAAMRAHIGHARQRIFEGR 240 E++ + +EH+AI++AI G A A + H+ +A +R+ +G+ Sbjct: 181 RGNEARYEDFSRQVREEHEAIVEAIRAGDEMAARNAAQTHMFNAARRLSQGQ 232 >gi|300311570|ref|YP_003775662.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 258 Score = 107 bits (268), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 111/233 (47%), Gaps = 22/233 (9%) Query: 20 SEHICKQIIASILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGIVVSRRGSG 79 +E + + + +I+ G + KLP+E +LA +E SR VR+AL RLR + +V S RGSG Sbjct: 33 AERVYETLFHAIVEGRITVGSKLPSENDLATLFEVSRPVVRQALDRLREDQLVESLRGSG 92 Query: 80 NYVQRLPVLQSSAPAQIASIPD-----VERYYAFRACVEVGAAGIAATAREEEDIALMRH 134 YV+ P L APAQ + P+ + R +E A +AA R +D+ M Sbjct: 93 TYVKEKPGL---APAQPGAEPETRIGHIMNGLELRLVIEPECAAMAALRRNRQDLDRMER 149 Query: 135 CLQALRRAQLQGQTGVEEDLALHMAIARATRNPFFIST-------IEHALGPIRQCMELA 187 L+ A G D H AIA AT N F+ + HA+ +R M +A Sbjct: 150 LLEGFEAANRVGGIAHHYDFGFHEAIATATGNLRFVQVMKTLEYDVSHAVNMLRHLMHIA 209 Query: 188 QNLGSPQESKRIQVIDDEHQAIIDAIAQGSAQDAEAAMRAHIGHARQRIFEGR 240 KR Q DEH+ I + I A+ A AMR HI +AR R+F R Sbjct: 210 P-------WKRSQDAMDEHRQIFELIRVQDAEGARRAMRGHIENARTRMFNSR 255 >gi|300312368|ref|YP_003776460.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 278 Score = 106 bits (265), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/233 (33%), Positives = 126/233 (54%), Gaps = 12/233 (5%) Query: 12 SHRGQLSRSEHICKQIIASILRGELGENRKLPTEVELAQRYEASRTTVREALSRLRSEGI 71 S RG+++ ++H+ + I GE +LP+E+EL +R+ SRT +REA+SRL+SEG+ Sbjct: 23 SARGKVTLADHVTSVLARQIRAGEFAPETRLPSEMELTERFSVSRTVIREAISRLKSEGL 82 Query: 72 VVSRRGSGNYVQRLPVLQSSAPAQI--------ASIPDVERYYAFRACVEVGAAGIAATA 123 V SRRGSG V LP + P ++ SI V R R VE A +AA Sbjct: 83 VGSRRGSGTVV--LPA-NPATPFRLDLDVDDGRDSIQAVLRVIELRRGVEGEMAALAAQR 139 Query: 124 REEEDIALMRHCLQALRRAQLQGQTGVEEDLALHMAIARATRNPFFISTIEHALGPIRQC 183 R ++ LQA+ A G+ GV ED A H AI+ A+ NP + S ++ + Sbjct: 140 RTSAQNLAIQQALQAIDEAAAAGRDGVPEDFAFHAAISNASHNPLYTSLVQFLSQFLHAA 199 Query: 184 MELAQNLGSPQESKRIQVIDDEHQAIIDAIAQGSAQDAEAAMRAHIGHARQRI 236 + +A+ + + ++ +Q + EH A+ +AI+ G A+ A AA H+ ++ QR+ Sbjct: 200 IRVAR-MNEARSNEFVQQVRAEHAALAEAISAGDAEAARAAALRHMENSAQRL 251 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.131 0.367 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 664,803 Number of extensions: 24048 Number of successful extensions: 162 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 13 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)