BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0084.p (267 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313886|ref|YP_003777978.1| amino acid ABC transporter peri... 486 e-139 gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/sign... 229 2e-61 gi|300313169|ref|YP_003777261.1| amino acid transport periplasmi... 204 7e-54 gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/sign... 158 4e-40 gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/sign... 150 1e-37 >gi|300313886|ref|YP_003777978.1| amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 486 bits (1251), Expect = e-139, Method: Compositional matrix adjust. Identities = 248/267 (92%), Positives = 255/267 (95%) Query: 1 MKLTPLRHLARPAIAALILGLATHAAHADQLDDIKKAGKIRIATTSSTPLFGYSDDKLQP 60 M+ TPLR AR AIAAL+LGL HAA ADQLDDIKKAGKIRIATTSSTPLFGYSD+KLQ Sbjct: 1 MQHTPLRRAARTAIAALVLGLTAHAALADQLDDIKKAGKIRIATTSSTPLFGYSDEKLQL 60 Query: 61 AGSDVDAARLLAQDLGVQLDLIQVANAARVPTLQSNRADIVVGSLSITPERLKVIDFSTP 120 AGSDV+AARLLAQDLGVQLDLI VANAARVPTLQ+NRADIVVGSLSITPERLKVIDFSTP Sbjct: 61 AGSDVEAARLLAQDLGVQLDLIPVANAARVPTLQANRADIVVGSLSITPERLKVIDFSTP 120 Query: 121 YAVISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 YAVISLIIGAPKSM IKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS Sbjct: 121 YAVISLIIGAPKSMVIKDYADLNGKRIGVTRATPNDTLTTQNAKGAEIMRYEDDATLITS 180 Query: 181 MVTGQVEVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDNWVKT 240 MVTGQV+VFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWID WVKT Sbjct: 181 MVTGQVDVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDGWVKT 240 Query: 241 NQKNGKLNAIYKKHHGRDLPAAVQNPA 267 N KNGKLNAIYKK+HGRDLPAAVQNPA Sbjct: 241 NMKNGKLNAIYKKYHGRDLPAAVQNPA 267 >gi|300309582|ref|YP_003773674.1| amino acid ABC transporter/signal transduction system periplasmic binding protein [Herbaspirillum seropedicae SmR1] Length = 269 Score = 229 bits (583), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 114/242 (47%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 27 HADQLDDIKKAGKIRIATTSSTPLFGYSDDKLQPAGSDVDAARLLAQDLGVQLDLIQVAN 86 ADQLD I A K+R+A + P + DDKL+ GSDV+ A+ +A+D G++L+++ Sbjct: 27 QADQLDTILAAKKLRVAIDLAVPPYSMKDDKLRLIGSDVETAQRMAKDFGLELEVVPTTL 86 Query: 87 AARVPTLQSNRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPKSMAIKDYADLNGKR 146 RVP LQ+N+ADIV+ + SITPER KVIDFS PYA I +++GAP+SM I ADL GK+ Sbjct: 87 TNRVPYLQTNKADIVISAFSITPERAKVIDFSVPYAPILVVVGAPRSMKITSPADLAGKK 146 Query: 147 IGVTRATPND-TLTTQNAKGAEIMRYEDDATLITSMVTGQVEVFSSTPSNLQEMQKKAPG 205 I TR T ND LT A I R++DDAT +T+MV+GQ ++++++P L+ + +K P Sbjct: 147 IIATRGTTNDQELTKIAPSSATITRFDDDATSMTAMVSGQADIWATSPMLLKVVNQKNPS 206 Query: 206 KNLEMKFEQKAFDLGIAINKNQPRLKEWIDNWVKTNQKNGKLNAIYKKHHGRDLPAAVQN 265 +++E K KA L + + K +PRLKE ID W++TN NG+LN IYKK+H +LP + + Sbjct: 207 RDIESKLTLKANLLAVGLRKGEPRLKEKIDGWIRTNLSNGELNTIYKKYHEAELPPEILH 266 Query: 266 PA 267 PA Sbjct: 267 PA 268 >gi|300313169|ref|YP_003777261.1| amino acid transport periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 268 Score = 204 bits (518), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/253 (42%), Positives = 153/253 (60%), Gaps = 3/253 (1%) Query: 15 AALILGLATHAAHADQLD--DIKKAGKIRIATTSSTPLFGYSDDKLQPAGSDVDAARLLA 72 AA++LGLA A A DIK K+ +A P FG ++ KL+P GSDV+ ARLLA Sbjct: 12 AAVVLGLACFAQAAHADALADIKARKKVLVAIDLGAPPFGMTNAKLEPQGSDVETARLLA 71 Query: 73 QDLGVQLDLIQVANAARVPTLQSNRADIVVGSLSITPERLKVIDFSTPYAVISLIIGAPK 132 +DLGV+L+++QV R+P L + +AD+V+ S SITPER KV+ F+ PY ++ APK Sbjct: 72 KDLGVELEIVQVTGPNRIPFLMTGKADMVISSFSITPERQKVVAFTQPYGASQFVVAAPK 131 Query: 133 SMAIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDATLITSMVTGQVEVFSS 191 IK DL GKR+ V R D+L T A KG I+R++DDAT+ ++++GQV+ + Sbjct: 132 GENIKSLNDLVGKRVAVVRGNMQDSLLTPIAPKGTNIVRFDDDATVTAAIISGQVDALCT 191 Query: 192 TPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDNWVKTNQKNGKLNAIY 251 S + K+ P KNLE KF K I + K +P L++W++ W+ N KNGKL IY Sbjct: 192 PNSLASAIAKQNPSKNLETKFAIKDIPYAIGLRKGEPALEKWLNEWISANLKNGKLPGIY 251 Query: 252 KKHHGRDLPAAVQ 264 ++ G +P Q Sbjct: 252 QQWVGSPMPDLAQ 264 >gi|300313535|ref|YP_003777627.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 260 Score = 158 bits (400), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 96/255 (37%), Positives = 146/255 (57%), Gaps = 8/255 (3%) Query: 17 LILGLATHA-------AHADQLDDIKKAGKIRIATTSSTPLFGYSDDKLQPAGSDVDAAR 69 L+LGL A A AD LDDI+K G +R+A + P FG D L+P G D+D A Sbjct: 6 LLLGLMAGAMMFSASVARADALDDIQKHGTLRVAVPADFPPFGSVDADLKPQGLDIDVAT 65 Query: 70 LLAQDLGVQLDLIQVANAARVPTLQSNRADIVVGSLSITPERLKVIDFSTPYAVISLIIG 129 L+A+ LGV+++LI V++A R+P L + + D+V+ S+ ER KVIDFS YA + Sbjct: 66 LIAKKLGVKVELIPVSSANRIPYLTTKKVDLVISSMGKNAEREKVIDFSAAYAPFFNGVF 125 Query: 130 APKSMAIKDYADLNGKRIGVTRATPND-TLTTQNAKGAEIMRYEDDATLITSMVTGQVEV 188 P +++K ADL GK I VTR + D LT A + RYED+ + I+S ++GQV++ Sbjct: 126 GPADLSVKSAADLAGKTIAVTRGSVEDLELTKIVPASATVKRYEDNNSTISSFLSGQVQL 185 Query: 189 FSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDNWVKTNQKNGKLN 248 ++ + + P K E KF K I +NK + +L++ +D + ++K+G L+ Sbjct: 186 VATGNVVAAAIIARNPPKKPETKFLIKDSPCFIGLNKGEKKLQDKVDAILAESKKDGSLS 245 Query: 249 AIYKKHHGRDLPAAV 263 AI +K G LPA + Sbjct: 246 AISQKWLGMPLPAGL 260 >gi|300311590|ref|YP_003775682.1| amino acid ABC transporter/signal transduction system periplasmic protein/domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 267 Score = 150 bits (378), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 96/265 (36%), Positives = 146/265 (55%), Gaps = 9/265 (3%) Query: 1 MKLTPLRHLARPAIAALILGLATHA---AHADQLDDIKKAGKIRIATTSSTPLFGYSDDK 57 M+++P R + A++LGLA A AD L DI+K G +RI FG + Sbjct: 1 MQMSP-----RKTMLAVVLGLAAMQGGLARADALADIQKNGVVRIGVPQDFAPFGSVNTD 55 Query: 58 LQPAGSDVDAARLLAQDLGVQLDLIQVANAARVPTLQSNRADIVVGSLSITPERLKVIDF 117 LQ G D+D ARL+AQ +GV+L L+ VA+A R+ LQ+++AD+V+ +L ER KVIDF Sbjct: 56 LQLQGLDIDVARLIAQKMGVKLQLVPVASANRIAYLQTHKADLVISTLGRNAEREKVIDF 115 Query: 118 STPYAVISLIIGAPKSMAIKDYADLNGKRIGVTRATPNDTLTTQNA-KGAEIMRYEDDAT 176 S PYA + + S+ + ADL K +GV R T D T A K A I RYED+ Sbjct: 116 SQPYAPYNNSVFGVASVKVSGPADLADKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNA 175 Query: 177 LITSMVTGQVEVFSSTPSNLQEMQKKAPGKNLEMKFEQKAFDLGIAINKNQPRLKEWIDN 236 +I++ V+GQV++ + + +KAP +K+ + + +NK +P L ++ Sbjct: 176 MISAYVSGQVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGEPALLAKVNE 235 Query: 237 WVKTNQKNGKLNAIYKKHHGRDLPA 261 + +K+G+LN I +K LPA Sbjct: 236 ALTAAKKSGELNGIVQKWLNVPLPA 260 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.315 0.131 0.365 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 840,249 Number of extensions: 33325 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 118 Number of HSP's successfully gapped: 17 Length of query: 267 Length of database: 1,619,870 Length adjustment: 84 Effective length of query: 183 Effective length of database: 1,222,130 Effective search space: 223649790 Effective search space used: 223649790 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 130 (54.7 bits)