BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0081.p (217 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313888|ref|YP_003777980.1| amino acid ABC transporter perm... 418 e-118 gi|300313167|ref|YP_003777259.1| amino acid ABC transporter perm... 261 5e-71 gi|300310828|ref|YP_003774920.1| amino acid ABC transporter perm... 258 2e-70 gi|300309584|ref|YP_003773676.1| amino acid ABC transporter perm... 191 3e-50 gi|300311471|ref|YP_003775563.1| amino acid ABC transporter perm... 124 7e-30 >gi|300313888|ref|YP_003777980.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 217 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 212/217 (97%), Positives = 212/217 (97%) Query: 1 MMGNFSWTYFFFMVQSIGWTLVLSALAFVLGGIGGFLVMLARISPRAWLRRPAILFIESV 60 MMG FSWTYFFFMVQSIGWTLVLSALAFVLGG GGFLVMLARISP AWLRRPAILFIE V Sbjct: 1 MMGGFSWTYFFFMVQSIGWTLVLSALAFVLGGAGGFLVMLARISPHAWLRRPAILFIECV 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYASAYLGDIWRGCVEAMPRPQWEAS 120 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIY SAYLGDIWRGCVEAMPRPQWEAS Sbjct: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYTSAYLGDIWRGCVEAMPRPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI Sbjct: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR Sbjct: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 >gi|300313167|ref|YP_003777259.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 261 bits (666), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 124/216 (57%), Positives = 165/216 (76%) Query: 2 MGNFSWTYFFFMVQSIGWTLVLSALAFVLGGIGGFLVMLARISPRAWLRRPAILFIESVQ 61 M FS+ + +++Q+ WT+VLS +AFV GG+ GF++ L R+SP A LR A +I+ VQ Sbjct: 1 MNAFSFLHVEYLLQAAVWTVVLSLVAFVFGGVAGFVIALWRVSPNAVLRGIASGYIQVVQ 60 Query: 62 GIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYASAYLGDIWRGCVEAMPRPQWEASE 121 GIPLL++LF+ YFGL++ G L LVAAG++ IY +A+LG+IWRGC++A+P+ QWEASE Sbjct: 61 GIPLLVILFVAYFGLAIAGFKLTPLVAAGISFAIYCAAFLGEIWRGCIQAVPKTQWEASE 120 Query: 122 CLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIF 181 CL R++ L VI+PQA +++ PPT+GF+VQ++K TSLASVIGFV+L+RAGQIINNS F Sbjct: 121 CLGFNRFEQLTKVILPQAVKIATPPTVGFMVQIVKNTSLASVIGFVDLSRAGQIINNSTF 180 Query: 182 QPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 QPF VF V YF LC+PLS S ERKLNVSHR Sbjct: 181 QPFTVFGCVALIYFCLCFPLSALSKHFERKLNVSHR 216 >gi|300310828|ref|YP_003774920.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 258 bits (660), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 123/217 (56%), Positives = 173/217 (79%), Gaps = 1/217 (0%) Query: 1 MMGNFSWTYFFFMVQSIGWTLVLSALAFVLGGIGGFLVMLARISPRAWLRRPAILFIESV 60 M+ FS+ F F++++ WTL+LSALAF+ GGI GF+V L R S A LR + ++I+ + Sbjct: 1 MLAEFSFDNFVFLLEAARWTLLLSALAFLGGGIAGFIVALMRTSHLAPLRLLSAVYIQII 60 Query: 61 QGIPLLILLFIVYFGLSVYGLVLPALVAAGLAMMIYASAYLGDIWRGCVEAMPRPQWEAS 120 QG P+LILLF+ ++GL+++G LP +VAA +AM IY+SAYLG+IWRGC+EA+P PQWEAS Sbjct: 61 QGTPVLILLFLSFYGLAIFGYKLPPMVAATIAMTIYSSAYLGEIWRGCIEAVPVPQWEAS 120 Query: 121 ECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSI 180 L++TRWQ LR VI+PQA R+SLPPT+GFLVQ++K TS+AS+IG VEL +AG++++N+ Sbjct: 121 TALAMTRWQQLRYVILPQAVRISLPPTVGFLVQIVKNTSIASIIGLVELAQAGKLVSNAT 180 Query: 181 FQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 FQPFLVF +V YF+ CYPLSR++ ++ERK + +HR Sbjct: 181 FQPFLVFPIVAGIYFVFCYPLSRFAFALERKYH-AHR 216 >gi|300309584|ref|YP_003773676.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 215 Score = 191 bits (486), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 90/178 (50%), Positives = 132/178 (74%), Gaps = 2/178 (1%) Query: 42 RISPRAWLRRPAILFIESVQGIPLLILLFIVYFGLSVYGL-VLPALVAAGLAMMIYASAY 100 R+S LRR A +I+ +QG PLL+L+ + ++G ++ G+ + AL AA AM+IY SA+ Sbjct: 38 RVSALRPLRRLAAAWIQLIQGTPLLVLMGVCFYGPALAGVGTVEALPAAATAMLIYTSAF 97 Query: 101 LGDIWRGCVEAMPRPQWEASECLSLTRWQTLRLVIIPQATRLSLPPTIGFLVQLIKMTSL 160 LG+IWRGC++++ + QWEA+EC+ L+RWQ +R++++PQA R++ PPT+GF VQ+IK TS+ Sbjct: 98 LGEIWRGCIQSVHKSQWEAAECIGLSRWQRMRMIVLPQALRMATPPTVGFAVQVIKNTSV 157 Query: 161 AS-VIGFVELTRAGQIINNSIFQPFLVFLLVGSFYFLLCYPLSRWSASMERKLNVSHR 217 AS VIGF EL+ +++NNS FQPFL F YF +CYPLSRWS ++ERKL+ R Sbjct: 158 ASLVIGFAELSYNAKVLNNSTFQPFLYFGSAALLYFAMCYPLSRWSRALERKLHAHRR 215 >gi|300311471|ref|YP_003775563.1| amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 221 Score = 124 bits (310), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/206 (36%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 13 MVQSIGWTLVLSALAFVLGG-IGGFLVMLARISPRAWLRRPAILFIESVQGIPLLILLFI 71 + + +G+TL L ALA +LGG + GF++ +ARI P + PA +++ ++G PLL+ +F+ Sbjct: 16 LAKGVGYTL-LFALASMLGGLVLGFVLAVARIVPWRPIHWPAAIYVSMMRGTPLLVQIFV 74 Query: 72 VYFGLSVYGLVLPALVAAGLAMMIYASAYLGDIWRGCVEAMPRPQWEASECLSLTRWQTL 131 VY+GL G+ L A L + + ASAYL + RG + + R QW A+ + LT +QTL Sbjct: 75 VYYGLPGMGIEFSPLTAGVLTLSLNASAYLSESLRGAILGVTRGQWNAAFSVGLTYFQTL 134 Query: 132 RLVIIPQATRLSLPPTIGFLVQLIKMTSLASVIGFVELTRAGQIINNSIFQPFLVFLLVG 191 R +I+PQA R+++P L+ LIK TSL SVI EL A + + F+P +++ Sbjct: 135 RYIIVPQAVRIAVPSMSNTLISLIKDTSLVSVITVTELMLATKEVIAVTFRPLPLYVAAA 194 Query: 192 SFYFLLCYPLSRWSASMERKLNVSHR 217 + Y++L +E+KL +H+ Sbjct: 195 AIYWMLSLCFEALQHRLEKKLGKAHQ 220 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.332 0.144 0.458 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 605,585 Number of extensions: 20850 Number of successful extensions: 159 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 150 Number of HSP's successfully gapped: 19 Length of query: 217 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 136 Effective length of database: 1,236,335 Effective search space: 168141560 Effective search space used: 168141560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (22.0 bits) S2: 128 (53.9 bits)