BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0072.p (516 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis pro... 890 0.0 gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis tra... 677 0.0 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 552 e-158 gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen... 527 e-151 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 511 e-146 >gi|300313897|ref|YP_003777989.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 516 Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust. Identities = 468/516 (90%), Positives = 491/516 (95%) Query: 1 MNWFNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 M WFNNLKIAKKLI+SFAAVI+LTVILG+FAIRELKAVNQASTDMATNWLPTIKAAQSIQ Sbjct: 1 MTWFNNLKIAKKLIVSFAAVIVLTVILGLFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 Query: 61 ASLPRMRISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFS 120 ASLPRMRISELQM+TAATPAEREDALKAIKSRLDILAKQRA YEAQISEAEEK+ YEKFS Sbjct: 61 ASLPRMRISELQMVTAATPAEREDALKAIKSRLDILAKQRAAYEAQISEAEEKVLYEKFS 120 Query: 121 KSFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSDQ 180 KSFA YLEIDK+LA IS GKEEEARA+FKGDSNKTFRSM+E+MDEIIK+NDAGS RSD Sbjct: 121 KSFATYLEIDKELARISAEGKEEEARALFKGDSNKTFRSMIENMDEIIKVNDAGSKRSDD 180 Query: 181 TASDVFNSARAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIRS 240 A V+ SA WIIGLLAAIVVIA GLA+ VARAVSRPLNEAV+VAERVAQGDLT+DIR+ Sbjct: 181 MAEQVYRSATLWIIGLLAAIVVIALGLAVMVARAVSRPLNEAVAVAERVAQGDLTMDIRA 240 Query: 241 DSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSLE 300 S DETGMLMHSLRAMNDSL +IV EVR GTD ITTASQEIATGNLDLSSRTEEQAGSLE Sbjct: 241 TSTDETGMLMHSLRAMNDSLQQIVGEVRTGTDTITTASQEIATGNLDLSSRTEEQAGSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIAD 360 ETASAMEELTATVKQNADNARQANQLAASASD+A+QGG VVGQVVQTMEGITESSNRIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAASASDIATQGGAVVGQVVQTMEGITESSNRIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 Query: 421 SVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDEV 480 SV+KVGAGSQLVERAGATMSEVVASV+RVTDVVAEISAAS+EQSTGIEEINRAITQMDEV Sbjct: 421 SVEKVGAGSQLVERAGATMSEVVASVRRVTDVVAEISAASNEQSTGIEEINRAITQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKIQR 516 TQQNAALVEEAAAAAQSLQDQA RLSQVVSVFK+QR Sbjct: 481 TQQNAALVEEAAAAAQSLQDQAARLSQVVSVFKLQR 516 >gi|300310474|ref|YP_003774566.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 677 bits (1747), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/514 (69%), Positives = 427/514 (83%) Query: 1 MNWFNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 M WF NL IAKKL LSFA VI LT++ G+FAI+ELK VN+AS ++ + W+PT+ AA+ +Q Sbjct: 1 MIWFYNLNIAKKLALSFAVVIALTLLQGLFAIKELKQVNKASGEIVSKWMPTMDAARELQ 60 Query: 61 ASLPRMRISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFS 120 SLP +R++EL+++TA TP ER A KAIK RLD L +QRA +E ++SE +EK Y +F Sbjct: 61 GSLPPLRLNELELVTAVTPQERAAANKAIKDRLDALTRQRAIFEQRMSEPQEKEQYAQFL 120 Query: 121 KSFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSDQ 180 K+ AY+++D++LAE++ + +E RA+F GDS K +RSM+ ++D I+KIN +GS ++D+ Sbjct: 121 KNLTAYVKVDEQLAEMAANQQYDETRALFNGDSAKLYRSMVGNLDAIVKINTSGSAQADE 180 Query: 181 TASDVFNSARAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIRS 240 AS VF A+ WI+GLLAA V+IA LA VA VSRPL EAV +A+RVA+GDLT+ IR Sbjct: 181 EASTVFRGAQRWIVGLLAATVLIASLLAFLVATNVSRPLKEAVQIAQRVARGDLTLRIRP 240 Query: 241 DSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSLE 300 +DETG LM +LRAMN+SL IVSEVR GTD ITTAS EIA GNLDLS+RTE+QAGSLE Sbjct: 241 AGRDETGALMEALRAMNESLRDIVSEVRQGTDTITTASHEIARGNLDLSNRTEQQAGSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIAD 360 ETASAMEELT+TV QNADNARQANQLAA+ASD+ASQGGEVVGQVVQTMEGITESS RIAD Sbjct: 301 ETASAMEELTSTVTQNADNARQANQLAATASDIASQGGEVVGQVVQTMEGITESSRRIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 II+VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LIDD Sbjct: 361 IISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIDD 420 Query: 421 SVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDEV 480 SVQKV AGS LVERAG+TM+EVVASV+RVTDVVAEISAA+ EQS GI E+N AITQMDE Sbjct: 421 SVQKVSAGSALVERAGSTMTEVVASVRRVTDVVAEISAATQEQSGGINEVNLAITQMDET 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKI 514 TQQNAALVE+AAAAA SL+ QA L+ VV FK+ Sbjct: 481 TQQNAALVEQAAAAADSLKGQASNLAAVVGKFKL 514 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 552 bits (1423), Expect = e-158, Method: Compositional matrix adjust. Identities = 312/516 (60%), Positives = 391/516 (75%) Query: 1 MNWFNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 M WF +L+I++KLI +F V+ + LG+F+IR+L VN AST+++TNWLP+I+ +Q Sbjct: 1 MKWFYDLRISRKLITTFLVVVAMVAALGVFSIRQLDQVNSASTEISTNWLPSIRTLARLQ 60 Query: 61 ASLPRMRISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFS 120 ++ R+R ELQ I A E E+ + ++ +++ L +A Y QISE EEK Y + Sbjct: 61 LAMSRLRSFELQHILAKDAKEYEEVERGMQVQMNNLKTAQAEYVTQISEPEEKAIYPEVE 120 Query: 121 KSFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSDQ 180 K A ++ K+ +S GK+EEAR + +G+S K +R+ L+ +D++ +ND G+ S++ Sbjct: 121 KLIATFVSEHDKIIALSRQGKDEEARNLQRGESTKAYRTSLQQIDKLAAVNDKGADISNK 180 Query: 181 TASDVFNSARAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIRS 240 A ++ AR WII +AA + +A LA+ V+R ++RPL EAVSVA+RVA GDLT I Sbjct: 181 QADAIYAQARLWIIVTVAACIGLAMLLAVWVSRLIARPLEEAVSVAQRVAGGDLTTRIEP 240 Query: 241 DSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSLE 300 KDETG L+ +L++MNDSL IV +VR GT ITTAS EIA+GNLDLSSRTEEQA SLE Sbjct: 241 AGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLSSRTEEQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIAD 360 ETASAMEELT+TVKQNADNARQANQLA SAS+VASQGG VV QVV TM I SS +IAD Sbjct: 301 ETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIAD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA AAKEIK+LI+ Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEG 420 Query: 421 SVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDEV 480 SV +V GS+LVERAG TMSEVV SV+RVTD+V EIS+AS EQS GIE++N AI QMDEV Sbjct: 421 SVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEV 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKIQR 516 TQQNAALVEEAAAAAQSLQ+QA L+Q V FK+++ Sbjct: 481 TQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQ 516 >gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sensory transducer protein [Herbaspirillum seropedicae SmR1] Length = 567 Score = 527 bits (1357), Expect = e-151, Method: Compositional matrix adjust. Identities = 286/515 (55%), Positives = 385/515 (74%), Gaps = 1/515 (0%) Query: 1 MNWFNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 MNWF N +IA KL+L+FA V++LT LGIF+I +L VNQA+T++ATNWLP+I++ ++ Sbjct: 1 MNWFYNRRIATKLLLAFACVLLLTGGLGIFSIVQLHKVNQAATELATNWLPSIRSLNDMK 60 Query: 61 ASLPRMRISELQMITAATPAEREDALKAIKSR-LDILAKQRATYEAQISEAEEKLAYEKF 119 +L R+R ++ Q+ ++ A+ + ++ L+ LA+ R Y QISE EK + Sbjct: 61 VALSRVRANQAQLALYDGDEKQSSAVIGLMNKNLEALAEARKQYTGQISEPGEKALFPGV 120 Query: 120 SKSFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSD 179 + ++ + AGK +EA+ + G + + + S+L +D++ ++N GS++S Sbjct: 121 NARIDKFIALHGDTLAAVRAGKLDEAKRLLLGPAFENYLSLLNDLDKLAQVNLDGSVQST 180 Query: 180 QTASDVFNSARAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIR 239 ++A ++ A+ W++ +L ++ LAL +AR ++ PL A A +A GDLT DI Sbjct: 181 RSAETTYDQAQVWVVAILIGALLAGLALALFIARVIATPLRSAGEFAHLIAAGDLTADIT 240 Query: 240 SDSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSL 299 + S DETG L +L AMN SL +IVS+VR GTDAI TAS +I++GNLDLSSRTEEQA SL Sbjct: 241 ARSDDETGQLTAALAAMNTSLRRIVSQVRSGTDAIATASGQISSGNLDLSSRTEEQASSL 300 Query: 300 EETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIA 359 EETASAMEELT+TV+QNA+NARQANQLA SAS +A +GG+VV QV++TM I SS +I Sbjct: 301 EETASAMEELTSTVRQNAENARQANQLALSASTIAEEGGKVVSQVIETMGSIDASSKKIV 360 Query: 360 DIITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLID 419 DII+VID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRSA+AAKEIK LID Sbjct: 361 DIISVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSATAAKEIKTLID 420 Query: 420 DSVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDE 479 +SVQ+VG GS LV++AG T+SEVV+SV+RVTDV++EISAAS EQ+ GIE++N+AITQMDE Sbjct: 421 NSVQQVGLGSGLVQKAGVTISEVVSSVQRVTDVMSEISAASGEQTQGIEQVNQAITQMDE 480 Query: 480 VTQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKI 514 VTQQNAALVEEAA+A+QSL QA RLS++V VF++ Sbjct: 481 VTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 511 bits (1316), Expect = e-146, Method: Compositional matrix adjust. Identities = 288/514 (56%), Positives = 373/514 (72%) Query: 1 MNWFNNLKIAKKLILSFAAVIILTVILGIFAIRELKAVNQASTDMATNWLPTIKAAQSIQ 60 MNWF NLKIA KL +F V++ + LG F+ EL AVN++STD+A NWLP+I A + Sbjct: 1 MNWFYNLKIAHKLNAAFLVVLVFIIGLGGFSSLELAAVNKSSTDIARNWLPSIDALSKMS 60 Query: 61 ASLPRMRISELQMITAATPAEREDALKAIKSRLDILAKQRATYEAQISEAEEKLAYEKFS 120 +L R R ++Q + A E + + + ++ L K+ A Y +SE EK Y + Sbjct: 61 LALARSRSFDMQQLLTADKQEEKASRERADKQMATLLKEVARYGKLVSEPREKELYPEIE 120 Query: 121 KSFAAYLEIDKKLAEISGAGKEEEARAIFKGDSNKTFRSMLESMDEIIKINDAGSMRSDQ 180 ++ A Y E ++++ + +++ A A+ S +R + E + E+ ++N G+ SD Sbjct: 121 RNIALYKEAHERMSALFEQDQKQAAHALMNSTSTPVYRKLQEQIGELSEVNSKGAALSDA 180 Query: 181 TASDVFNSARAWIIGLLAAIVVIAFGLALAVARAVSRPLNEAVSVAERVAQGDLTVDIRS 240 A ++ A I+ L+ VV+A L+ +AR V+RPL AV +A +VA GDLT DI + Sbjct: 181 DADHIYGQANMAILALVTTCVVLAMALSWWIARLVARPLANAVDIARQVAAGDLTADIPT 240 Query: 241 DSKDETGMLMHSLRAMNDSLNKIVSEVRYGTDAITTASQEIATGNLDLSSRTEEQAGSLE 300 +DETG L+ +LR MN +L IV EVR GTD ITTAS EIATGN+DLSSRTE+QAG+LE Sbjct: 241 AHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLSSRTEQQAGALE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAASASDVASQGGEVVGQVVQTMEGITESSNRIAD 360 ETASAMEELT+TV+QN+DNARQANQLA +AS+VA GG VVG+VV TM I +SS +I D Sbjct: 301 ETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVD 360 Query: 361 IITVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDD 420 II VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA EIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDD 420 Query: 421 SVQKVGAGSQLVERAGATMSEVVASVKRVTDVVAEISAASSEQSTGIEEINRAITQMDEV 480 SV KV GS+LV+ AG TM+EVVASVKRV+D+VAEI+AA +EQ+ GIE+IN A+ QMDE Sbjct: 421 SVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDEN 480 Query: 481 TQQNAALVEEAAAAAQSLQDQAGRLSQVVSVFKI 514 TQQNAALVE+AAAAA++LQ+QAGRLS+ VSVF++ Sbjct: 481 TQQNAALVEQAAAAAKALQEQAGRLSETVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.124 0.312 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,020,146 Number of extensions: 32709 Number of successful extensions: 554 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 260 Number of HSP's successfully gapped: 72 Length of query: 516 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 427 Effective length of database: 1,198,455 Effective search space: 511740285 Effective search space used: 511740285 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)