BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0067.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313902|ref|YP_003777994.1| hypothetical protein Hsero_4620...   335   2e-93

>gi|300313902|ref|YP_003777994.1| hypothetical protein Hsero_4620
           [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  335 bits (860), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/300 (68%), Positives = 239/300 (79%), Gaps = 2/300 (0%)

Query: 1   MSIPPLTDAQRAELRAALPLLEQADSALSPRLKKIRRDIEIADRQRRRYRIRLVEKQLLP 60
           M+  PLTDA RAELRAALP+LE+AD  L PRL K+R  I  ADR+RRRYRI LVE+QLLP
Sbjct: 1   MTSSPLTDALRAELRAALPILERADDLLGPRLGKVRSAIATADRRRRRYRIHLVERQLLP 60

Query: 61  AISRSTLARLQREVPDFVDELILDSFARHQRRCMWFGWMAWLAGPAYREALALMRVRLTR 120
           AIS +TL RL   +PDFVD+LI  +FA+HQRR MWFGWMAW AG  YREAL LMRVRLTR
Sbjct: 61  AISPATLQRLHDTLPDFVDDLIRSTFAQHQRRFMWFGWMAWFAGKPYREALTLMRVRLTR 120

Query: 121 HIDRKRHGKLAALRAELDRLDQERRALLSASRALVALVRLIRQSLHSGSGLEESRWVQLR 180
           ++DR+R G+L A+R ELDRLD ERRAL  ASR L AL+RLIRQ+L  G  L+   W QLR
Sbjct: 121 YVDRQRFGQLDAMRRELDRLDGERRALYDASRTLRALMRLIRQALRDGIDLDPQSWQQLR 180

Query: 181 ALLAQLPAVQPVKRRRAQRRDDEDNAALFSFTTSSQGVSLFRDVSERNSDPDAFQGQFDG 240
            LLAQLP +QP   RR +R+DD+D AALFSFTTSSQG SL+RD+ +   DPDAFQGQFDG
Sbjct: 181 TLLAQLPPLQPPAVRRTRRQDDDDGAALFSFTTSSQGSSLWRDMGQ-GRDPDAFQGQFDG 239

Query: 241 GGASGDWDNGRDGSGDTSGPEGRSEASGSRSQRDATDLAPVAAAAGAVAIATDDSLGLFS 300
           GGASGDWDNG++G+GDT+GPE RS +  +R    A D+APVAAAAGAVAIATDDSLGLFS
Sbjct: 240 GGASGDWDNGKEGNGDTAGPESRSGSQANRGNA-ANDMAPVAAAAGAVAIATDDSLGLFS 298


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.383 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 735,786
Number of extensions: 26497
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)