BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0066.p
         (309 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313903|ref|YP_003777995.1| hypothetical protein Hsero_4621...   569   e-163

>gi|300313903|ref|YP_003777995.1| hypothetical protein Hsero_4621
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  569 bits (1466), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/309 (87%), Positives = 287/309 (92%)

Query: 1   MSELFVITTYFNPVGYASRRRNYGLFMQGMREAGVPCLTVECAFGDAPFDLPPSLDVIQI 60
           MSELFVITTYFNPVGYA+RRRNY LFMQGMR AGV CLTVECAFGDAPFDLPPSLDVIQ+
Sbjct: 1   MSELFVITTYFNPVGYAARRRNYDLFMQGMRAAGVTCLTVECAFGDAPFDLPPSLDVIQV 60

Query: 61  RSETLLWQKERLLNLGASWLPASCRFVAWIDCDILFDNPRWPADLVQALQRHRVVQVFET 120
           R+ TLLWQKERLLNLGASWLPA CR+VAW+DCDILFDNPRW ADLV+AL RHR+VQVFET
Sbjct: 61  RAATLLWQKERLLNLGASWLPAHCRYVAWLDCDILFDNPRWAADLVEALGRHRIVQVFET 120

Query: 121 CTRLDRHGQAGATPDLCHSFASVMARDPATLNAGRYDLHGHTGYGWAMHRDIFDRVGLYE 180
           CTRLDRHGQ GA PDLC SFASVMARDP+TLNAGRYDLHGHTGYGWAMHR+IFD+VGLYE
Sbjct: 121 CTRLDRHGQVGAPPDLCRSFASVMARDPSTLNAGRYDLHGHTGYGWAMHREIFDQVGLYE 180

Query: 181 CAISGSADHFMAHAIFNDCNFCIRNALKHEPRQLSHLRAWSARFHAEVRGSLGVVPGHIR 240
            AISGSADHFMAHAIFNDCNFCIRNALK++PRQ++HLR WS RFHAEV G LGVVPGHIR
Sbjct: 181 GAISGSADHFMAHAIFNDCNFCIRNALKNDPRQIAHLREWSERFHAEVEGRLGVVPGHIR 240

Query: 241 HLWHGDAVNRRYFLRMHDITDLGYDPWNDLAIHPGQPLEWAATMDKPGLRDYFARYFASR 300
           HLWHGDAVNRRYFLRMHDIT+LGYDPW DL + PGQPLEWA  MDKPGLRDYFARYF+SR
Sbjct: 241 HLWHGDAVNRRYFLRMHDITELGYDPWTDLDLRPGQPLEWAPGMDKPGLRDYFARYFSSR 300

Query: 301 HEDGEELAA 309
            EDG ELAA
Sbjct: 301 LEDGVELAA 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.327    0.140    0.474 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,124,181
Number of extensions: 49429
Number of successful extensions: 120
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 120
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 224
Effective length of database: 1,217,395
Effective search space: 272696480
Effective search space used: 272696480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 130 (54.7 bits)