BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0064.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623...   432   e-122

>gi|300313905|ref|YP_003777997.1| hypothetical protein Hsero_4623
           [Herbaspirillum seropedicae SmR1]
          Length = 265

 Score =  432 bits (1110), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 213/258 (82%), Positives = 236/258 (91%), Gaps = 2/258 (0%)

Query: 8   IKCLLAGLVLA--IAAPLAAHAGQSCEPAIPDATAVQAQLDMAVRTVERLNASAADVVII 65
           IK LLA LVLA  + A LAAHAGQ+CE  IP+ATAV+AQLDMAV+TVERLNAS ADVVII
Sbjct: 8   IKHLLASLVLAQGLCAALAAHAGQACEQTIPEATAVRAQLDMAVKTVERLNASGADVVII 67

Query: 66  GRVGQDLSKYRQRYSHLAFAYRDGQQWVVVHKLNECGTAVSNLYEQGLGQFFMDSPFLLE 125
           GR+GQDLSKY+QRYSHLA AYRD QQW VVHKLNECGTAVSNLYEQG+GQFFMDSPFLLE
Sbjct: 68  GRIGQDLSKYQQRYSHLAIAYRDEQQWYVVHKLNECGTAVSNLYEQGMGQFFMDSPFLLE 127

Query: 126 AYVAVPQPEVQQRLRAILVRPQVTRLHEAQYNMLAYPWATRYQQSNQWVNEMLAMALEPQ 185
           AYVAVP PEVQ++LRA +VRPQVTR+HE QY+MLAYPWA+RYQQSNQW+ E LA+ALEPQ
Sbjct: 128 AYVAVPPPEVQEKLRAAIVRPQVTRMHEPQYSMLAYPWASRYQQSNQWITETLALALEPQ 187

Query: 186 ITTREQAQAWLKLKGYVPDTLNLGPMTRLGGRMFKANIAFDDHPNALRFSDRIETTTADS 245
           I+ REQAQAWL+ KGY PDTL+LGPMTRLGGRMFKANIAFDDHPNALRFSDRIETTTADS
Sbjct: 188 ISNREQAQAWLRFKGYAPDTLHLGPMTRLGGRMFKANIAFDDHPNALRFSDRIETTTADS 247

Query: 246 LLAFLQKAGLEASHFVIQ 263
           +  FL+++GLEASHFVIQ
Sbjct: 248 VFTFLRRSGLEASHFVIQ 265


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 725,678
Number of extensions: 27410
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)