BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0048.p (504 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspi... 757 0.0 gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspi... 612 e-176 gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspi... 418 e-118 gi|300310865|ref|YP_003774957.1| response regulator containing a... 199 3e-52 gi|300312843|ref|YP_003776935.1| response regulator containing a... 191 1e-49 >gi|300313918|ref|YP_003778010.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust. Identities = 371/497 (74%), Positives = 424/497 (85%) Query: 5 ICGGTKIKQLKKYLVVVLGIAMLMVLAMCASTLYQSYRQTRLSAVANAGNVTLISQRAIS 64 G KIKQLK YLVV+L IA+LMV+A+ ASTLYQSY+QTR SAV+NA NVTL+SQRAIS Sbjct: 16 FAGSAKIKQLKNYLVVILAIAVLMVMAISASTLYQSYQQTRQSAVSNASNVTLVSQRAIS 75 Query: 65 RNLEVLSLSLDTLAYRYQHPLGARRLEEAQRYAYLFGSAASVSHIVVMAVIGPKGEVLAS 124 RNLE+LSLSLDTLAYR+QHPL ARRL +AQRYAYLFGS +VSHI VMAV+ G V S Sbjct: 76 RNLEMLSLSLDTLAYRFQHPLSARRLNDAQRYAYLFGSTTNVSHIAVMAVLDADGRVQVS 135 Query: 125 SRRRPGEPAPNYGDRAYFTAHRDADNVGLYVSRPIQASLGNELQVVVLSKRLFNDDGSFG 184 SR G AP+Y DRAYF AHRD+ VGLYVSRP+QASLGNELQVVVLSKRL N+DGSF Sbjct: 136 SRLGRGNGAPHYADRAYFIAHRDSPTVGLYVSRPMQASLGNELQVVVLSKRLSNEDGSFA 195 Query: 185 GVVVMALDLAYFRDLFEGLSLGADGVISLYSDDGVAYMRVPYRDEVIGRDLSGSANFQRI 244 GVVVMALDLAYFR+LFEGL+LG +G+ISLYSD+G+AYMRVPYR+ +IGRD+S + NFQR+ Sbjct: 196 GVVVMALDLAYFRELFEGLALGDEGIISLYSDEGIAYMRVPYRETIIGRDISQTGNFQRL 255 Query: 245 KSALQHEEGSFFARANSDGVERLYTFRRIPDSPLIVFVGYSQEAIFKSWRKTLYAVILSL 304 ++ L EEGSFFA A +DGV RLYTFRRIP SPLIVFVGY++EAIFK+WRKT YAV++SL Sbjct: 256 RAMLSEEEGSFFAHATNDGVRRLYTFRRIPGSPLIVFVGYAEEAIFKTWRKTFYAVLVSL 315 Query: 305 FIFTLLLAYLLSHVRHELRRRVSIERRLEELALTDGLTGLLNRRALDDALQATWERCRRN 364 IF LL A+LL HVR ELRRRV+ ER+LE LA TDGLT LLNRRALD+ALQATWERC+RN Sbjct: 316 AIFGLLTAWLLLHVRQELRRRVTAERQLEALARTDGLTDLLNRRALDEALQATWERCQRN 375 Query: 365 LNSTFSVLFIDVDYFKLYNDSYGHKLGDEVLREVAQAINENLPRNTDCAGRYGGEEFVVL 424 L ++FSVLFIDVDYFK YND+YGHKLGD VL+EVA + LPR+TDCAGRYGGEEFVVL Sbjct: 376 LGASFSVLFIDVDYFKAYNDTYGHKLGDTVLKEVAATLTARLPRHTDCAGRYGGEEFVVL 435 Query: 425 LELTEEQGALLMAQRLCDAVYSRLIVHATSPLRVVTISVGVATLQRGHHRRVEDVLNAAD 484 LE T+ QGA +MAQRLCDAV R I H +SPL VVTISVGVATL+R HHRRVEDVLNAAD Sbjct: 436 LEQTDLQGAQMMAQRLCDAVRERHIAHTSSPLAVVTISVGVATLERDHHRRVEDVLNAAD 495 Query: 485 AALYRAKRDGRNAVRVS 501 AALYRAK+ GR+ V +S Sbjct: 496 AALYRAKQAGRDRVHLS 512 >gi|300313329|ref|YP_003777421.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 501 Score = 612 bits (1579), Expect = e-176, Method: Compositional matrix adjust. Identities = 296/492 (60%), Positives = 384/492 (78%), Gaps = 1/492 (0%) Query: 11 IKQLKKYLVVVLGIAMLMVLAMCASTLYQSYRQTRLSAVANAGNVTLISQRAISRNLEVL 70 + +L+KYL ++LG+ ++MVL++C ++LY+ YRQTR+SA+ A NVTLI QRAISRN+E+L Sbjct: 1 MGRLQKYLALILGLIIMMVLSICGASLYEGYRQTRISAITEANNVTLIVQRAISRNMEIL 60 Query: 71 SLSLDTLAYRYQHPLGARRLEEAQRYAYLFGSAASVSHIVVMAVIGPKGEVLASSRRRPG 130 SL++DTLAYRYQHPL + +RY YLFGS A+ HI +A++ G V +SRR Sbjct: 61 SLAMDTLAYRYQHPLDLTHASDEERYNYLFGSTAAAHHITALAILDADGYVRVTSRRSAS 120 Query: 131 EPAP-NYGDRAYFTAHRDADNVGLYVSRPIQASLGNELQVVVLSKRLFNDDGSFGGVVVM 189 NY +R YFT HRD+ + GL++SRPI+A+LGNEL VVVLSKRL DGSF GVV+M Sbjct: 121 PSVVVNYSERTYFTVHRDSADAGLFISRPIKANLGNELPVVVLSKRLSRKDGSFDGVVLM 180 Query: 190 ALDLAYFRDLFEGLSLGADGVISLYSDDGVAYMRVPYRDEVIGRDLSGSANFQRIKSALQ 249 ALD++YFRDLF GL+LG DG++SLYSDDGV YMRVPY IGR+++ + NFQR+++ L Sbjct: 181 ALDMSYFRDLFTGLTLGEDGIMSLYSDDGVTYMRVPYHPSSIGREITNNPNFQRLRAMLV 240 Query: 250 HEEGSFFARANSDGVERLYTFRRIPDSPLIVFVGYSQEAIFKSWRKTLYAVILSLFIFTL 309 +G+FFARA++DGVERLYTFRRIPD+PLIV +G S+ IFK+W TLY+V+L L IFT Sbjct: 241 DNDGNFFARAHTDGVERLYTFRRIPDAPLIVLLGRSERFIFKTWYDTLYSVLLLLIIFTA 300 Query: 310 LLAYLLSHVRHELRRRVSIERRLEELALTDGLTGLLNRRALDDALQATWERCRRNLNSTF 369 L LL VR EL +RV+ E++LE+LA TDGLTGLLNRR+LD+AL A W+R +R+ + F Sbjct: 301 LAGVLLMLVRRELLKRVAAEKQLEDLARTDGLTGLLNRRSLDEALLAVWQRSQRSPTAGF 360 Query: 370 SVLFIDVDYFKLYNDSYGHKLGDEVLREVAQAINENLPRNTDCAGRYGGEEFVVLLELTE 429 S LFIDVDYFK YND+YGH++GD VL+ VA + E+L R D AGRYGGEEFVVLLE T+ Sbjct: 361 STLFIDVDYFKRYNDTYGHEMGDTVLQAVAAVLREHLQRQNDLAGRYGGEEFVVLLEQTD 420 Query: 430 EQGALLMAQRLCDAVYSRLIVHATSPLRVVTISVGVATLQRGHHRRVEDVLNAADAALYR 489 E GAL MAQ+LC+A+Y+R I H+ SPL V+++S+GVAT+ R H+R+EDVLNAAD ALY Sbjct: 421 EHGALRMAQQLCEAIYNRGIPHSGSPLGVISVSIGVATMNRAPHQRMEDVLNAADHALYI 480 Query: 490 AKRDGRNAVRVS 501 AKR+GRN V V+ Sbjct: 481 AKREGRNRVCVA 492 >gi|300313782|ref|YP_003777874.1| transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 475 Score = 418 bits (1075), Expect = e-118, Method: Compositional matrix adjust. Identities = 220/473 (46%), Positives = 305/473 (64%), Gaps = 6/473 (1%) Query: 28 MVLAMCASTLYQSYRQTRLSAVANAGNVTLISQRAISRNLEVLSLSLDTLAYRYQHPLGA 87 M + + LYQS+RQ +A+ + N+ I+QR+ISRN+E+L+L+LD+L +RY+H Sbjct: 1 MTATVSCAVLYQSHRQVERAAIEHGANIARIAQRSISRNVELLTLALDSLTWRYRHT-QL 59 Query: 88 RRLEEAQRYAYLFGSAASVSHIVVMAVIGPKGE-VLASSRRRPGEPAPNYGDRAYFTAHR 146 + Q+ +L G ++ + ++ GE V+ S+ P P Y +FTAH+ Sbjct: 60 HEMPLQQKMEFLLGENIEARYVAALGIVDTDGELVVGSAALSQILPGP-YAQSDFFTAHQ 118 Query: 147 D---ADNVGLYVSRPIQASLGNELQVVVLSKRLFNDDGSFGGVVVMALDLAYFRDLFEGL 203 + GLY+S P+ L +QVVVLSKRL DGSF G+ +M L L YFRDLF+GL Sbjct: 119 THHAQGDTGLYISAPLTVRLERRMQVVVLSKRLAQPDGSFAGISLMVLYLDYFRDLFQGL 178 Query: 204 SLGADGVISLYSDDGVAYMRVPYRDEVIGRDLSGSANFQRIKSALQHEEGSFFARANSDG 263 +L DGVISLYS DG+AYMR+PY + IG L+ S + +RI S +GS+FARA DG Sbjct: 179 TLENDGVISLYSADGLAYMRIPYNEAFIGSRLNISEDLERIFSPSGPAQGSYFARAQQDG 238 Query: 264 VERLYTFRRIPDSPLIVFVGYSQEAIFKSWRKTLYAVILSLFIFTLLLAYLLSHVRHELR 323 LYTF R+P + VF+G + IF+ W LYAV+ + F + YL+ VR EL+ Sbjct: 239 PRWLYTFARVPGTGWTVFIGRTGARIFREWYNMLYAVLFLMASFCIASIYLIRRVRVELQ 298 Query: 324 RRVSIERRLEELALTDGLTGLLNRRALDDALQATWERCRRNLNSTFSVLFIDVDYFKLYN 383 RR +++++LEELA TD LT LLNRRALD+AL W+R N ++ FS+LF+DVD+FKLYN Sbjct: 299 RRSALDQQLEELARTDKLTSLLNRRALDEALARAWKRAEENPDAIFSLLFVDVDFFKLYN 358 Query: 384 DSYGHKLGDEVLREVAQAINENLPRNTDCAGRYGGEEFVVLLELTEEQGALLMAQRLCDA 443 D+YGHK GD L V++ I + R +D +GRYGGEEFVVLL T+ GA +A+R+ A Sbjct: 359 DTYGHKAGDYALMAVSRCIVAAVSRLSDQSGRYGGEEFVVLLNGTDTVGATHVAKRIISA 418 Query: 444 VYSRLIVHATSPLRVVTISVGVATLQRGHHRRVEDVLNAADAALYRAKRDGRN 496 + S I H SP ++T+S+GV +L R HH +EDV+ ADAALYRAK+DGRN Sbjct: 419 IQSLKIPHERSPFDILTVSIGVTSLLREHHSSIEDVVKDADAALYRAKQDGRN 471 >gi|300310865|ref|YP_003774957.1| response regulator containing a CheY-like receiver domain and a GGDEF domain transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 554 Score = 199 bits (507), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 142/421 (33%), Positives = 221/421 (52%), Gaps = 29/421 (6%) Query: 96 YAYLFGSAASVSHIVVMAVIGPKGEVLASSRRRPGEP-APNYGDRAYFTAHRDADNVGLY 154 + ++ S AS+ + + V+ +G +ASS++R + +P D + HR +D + Sbjct: 103 HDFMIRSVASLPQLAQLTVVDEQGRTVASSQQRMVQTGSPVQDDYFQYHQHRRSDRP--F 160 Query: 155 VSRPIQASLGNELQVVVLSKRLFNDDGSFGGVVVMALDLAYFRDLFEGLSLGADGVISLY 214 + +P+++ + + + + +S+R+ + DGSF GV+V +DLAYF+ +E ++G GVI Sbjct: 161 IGQPMRSHVTGQ-RTLTVSRRINHVDGSFAGVIVAEIDLAYFQRYYEQFNIGPHGVILFG 219 Query: 215 SDDGVAYMRVPYRDEVIGRDLSGSANFQRIKSALQHEEGSFFARANSDGVERLYTFRRIP 274 G +R P ++ R + S + K Q GSF R+ DGVER+ F++ Sbjct: 220 LTGGSLILRRPLLADMTDRSPAMSEALR--KHMEQARRGSFAMRSERDGVERISCFQQGE 277 Query: 275 DSPLIVFVGYSQEAIFKSWRKTLY----AVILSLFIFTLLLAYLLSHV------------ 318 P+ V +++ I + W + ++ V+L L + L+ V Sbjct: 278 AYPIFTVVALAKDDILEDWSRHVWVRGIGVVLLLAVICFGGKRLVVLVAGRERAEAQAIA 337 Query: 319 -RHELRRRVSIERRLEELALTDGLTGLLNRRALDDALQATWERCRRNLNSTFSVLFIDVD 377 R EL S+ R LE + DGLT + NRR D AL A R R + S++ IDVD Sbjct: 338 ARQELE---SLYRTLEAQSQKDGLTDVFNRRYFDAALAAELARLNRT-GESLSLMMIDVD 393 Query: 378 YFKLYNDSYGHKLGDEVLREVAQAINENLPRNTDCAGRYGGEEFVVLLELTEEQGALLMA 437 +FK +ND+YGH GD LR+VA AI+ R D RYGGEEF V+L A +A Sbjct: 394 HFKQFNDTYGHAAGDVCLRQVAAAISTVARRQGDIVARYGGEEFAVILPNCHPGSAQGLA 453 Query: 438 QRLCDAVYSRLIVHATSPLRVVTISVGVATLQRGHHRRVE--DVLNAADAALYRAKRDGR 495 R+ AV I H SP+ VVTISVGVA+L G +E +++++AD ALYRAK +GR Sbjct: 454 HRVVQAVRGLEIAHERSPMGVVTISVGVASLASGKSLLIEPRELIDSADGALYRAKEEGR 513 Query: 496 N 496 + Sbjct: 514 D 514 >gi|300312843|ref|YP_003776935.1| response regulator containing a CheY-like receiver and a GGDEF domains protein [Herbaspirillum seropedicae SmR1] Length = 525 Score = 191 bits (486), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 147/407 (36%), Positives = 215/407 (52%), Gaps = 27/407 (6%) Query: 114 VIGPKGEVLASSRRRPGEPAPNYGDRAYFTAHRDADNVGLYVSRPIQASLGNELQVVVLS 173 V G+ L +S P PA N DR YF HRD D+VG +V + + S ++ +S Sbjct: 115 VFDEHGKRLLTSSAPPLAPA-NNSDRDYFIWHRDHDDVGPHVGKAL-LSRSTGRWIIPMS 172 Query: 174 KRLFNDDGSFGGVVVMALDLAYFRDLFEGLSLGADGVISLYSDDGVAYMRVPYRDEVIGR 233 +RL + DGSF GV++ LD+ +F L+ + +G G I+L DG R+P+ I R Sbjct: 173 RRLNHPDGSFAGVLLATLDINHFNQLYRTVEIGKGGSIALLLRDGTLLTRMPFDPGYINR 232 Query: 234 DLSGSANFQRIKSALQHEEGSFFARANS-DGVERLYTFRRIPDSPLIVFVGYSQEAIFKS 292 D S F L H + + D +R +++ + PL++ V ++E Sbjct: 233 DFSQGRLFL---EGLPHSPFGYLEVVSPLDARQRFLSYQAVDKYPLVLVVTLAREEALAD 289 Query: 293 WRKTLY----AVILSLFIFTLLLAYLLSHVRHELRRRVS------------IERRLEELA 336 W++ + AV+L L I + L+ + ELR R RLE LA Sbjct: 290 WKQQTFVYGAAVLLLLAIIGVFGWRLVGQI--ELRLRAEDRALQAMGELQMANHRLEMLA 347 Query: 337 LTDGLTGLLNRRALDDALQATWERCRRNLNSTFSVLFIDVDYFKLYNDSYGHKLGDEVLR 396 DGLTGL NRR LD L+ ++R R+ + +++ IDVD+FK YND YGH+ GDE LR Sbjct: 348 HQDGLTGLANRRHLDTMLETEFKRAERS-GAALALIMIDVDFFKQYNDLYGHQAGDECLR 406 Query: 397 EVAQAINENLPRNTDCAGRYGGEEFVVLLELTEEQGALLMAQRLCDAVYSRLIVHATSPL 456 VA + E R D A RYGGEE +LL T+ +GA +A++L + + + H +P+ Sbjct: 407 RVAGVLKERQRRPGDLAARYGGEEMAMLLPGTDAEGACAVAEKLRAGIQALELPHRGNPV 466 Query: 457 RVVTISVGVATLQ--RGHHRRVEDVLNAADAALYRAKRDGRNAVRVS 501 VVT+SVGV L+ R V+ +L AADAALY AK +GRN VR++ Sbjct: 467 GVVTVSVGVCALELLPSAARSVQALLGAADAALYEAKHEGRNQVRLA 513 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,414,850 Number of extensions: 55414 Number of successful extensions: 279 Number of sequences better than 1.0e-08: 40 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 40 Length of query: 504 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 415 Effective length of database: 1,198,455 Effective search space: 497358825 Effective search space used: 497358825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)