BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0044.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA...   405   e-114
gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase su...   209   1e-55

>gi|300313919|ref|YP_003778011.1| acyl CoA:acetate/3-ketoacid CoA
           transferase subunit beta [Herbaspirillum seropedicae
           SmR1]
          Length = 216

 Score =  405 bits (1042), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 203/206 (98%), Positives = 206/206 (100%)

Query: 2   RAAKELQDGFYVNLGIGLPTLVANHVPNDIEVWLQSENGLLGIGPFPTEDQVDPDLINAG 61
           RAAKELQDGFYVNLGIGLPTLVANHVP+DIEVWLQSENGLLGIGPFPTEDQVDPDLINAG
Sbjct: 11  RAAKELQDGFYVNLGIGLPTLVANHVPSDIEVWLQSENGLLGIGPFPTEDQVDPDLINAG 70

Query: 62  KQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPGKMVKGMGGAM 121
           KQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPGKMVKGMGGAM
Sbjct: 71  KQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPGKMVKGMGGAM 130

Query: 122 DLVAGVGRVVLLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGVIDVTPGGLK 181
           DLVAGVGRVV+LMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGVIDVTPGGLK
Sbjct: 131 DLVAGVGRVVVLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGVIDVTPGGLK 190

Query: 182 LIELASGVTKEEVIEKTEAPLDVSEV 207
           LIELASGVTKEEVIEKTEAPLDVSE+
Sbjct: 191 LIELASGVTKEEVIEKTEAPLDVSEL 216


>gi|300313288|ref|YP_003777380.1| 3-oxoadipate CoA-transferase
           subunit B [Herbaspirillum seropedicae SmR1]
          Length = 213

 Score =  209 bits (532), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 105/202 (51%), Positives = 142/202 (70%), Gaps = 5/202 (2%)

Query: 2   RAAKELQDGFYVNLGIGLPTLVANHVPNDIEVWLQSENGLLGIGPFPTEDQVDPDLINAG 61
           R A+++ +G YVNLGIGLPT VAN++P D E++L SENG+LG+GP P   + D DLINAG
Sbjct: 12  RVAQDIPEGAYVNLGIGLPTKVANYLPADKEIFLHSENGVLGMGPAPAPGEEDEDLINAG 71

Query: 62  KQTVTTIPGSSFFSSADSFGMIRGGKINIAILGAMQVSAKGDLANWMIPG-KMVKGMGGA 120
           KQ VT + G ++F  ADSF M+RGG ++I +LGA QVSAKGDLANW       +  +GGA
Sbjct: 72  KQPVTLLTGGAYFHHADSFAMMRGGHLDICVLGAFQVSAKGDLANWHTGAPDAIPAVGGA 131

Query: 121 MDLVAGVGRVVLLMEHVAKAKDGSTSKKILNDCNLPLTGVGVVNRIITDLGVIDVTPGGL 180
           MDL  G  +V ++M+H  K    +   K++  C+ PLTG+G VNRI TDL VIDVTP GL
Sbjct: 132 MDLAIGAKQVFVMMDHQTK----TGESKLVEACSYPLTGIGCVNRIYTDLAVIDVTPHGL 187

Query: 181 KLIELASGVTKEEVIEKTEAPL 202
           ++ E+  G++ +E+ + T APL
Sbjct: 188 QVREIVEGLSFDELQKLTGAPL 209


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.137    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 675,661
Number of extensions: 28474
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 2
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)