BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0037.p
         (246 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313924|ref|YP_003778016.1| protein-disulfide isomerase [He...   428   e-121

>gi|300313924|ref|YP_003778016.1| protein-disulfide isomerase
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score =  428 bits (1101), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 208/246 (84%), Positives = 224/246 (91%), Gaps = 5/246 (2%)

Query: 1   MTTPAALHDTVLHYIHDPLCGWCYGAAPLVAAARAVLPVQAHGGGMMAGRNRRRVDAQLR 60
           MTTPAA HDTVLHYIHDPLCGWCYGAAPLVAAAR VLPVQAHGGGMMAGRNRRRVDAQLR
Sbjct: 1   MTTPAAAHDTVLHYIHDPLCGWCYGAAPLVAAARQVLPVQAHGGGMMAGRNRRRVDAQLR 60

Query: 61  DYVMPHDQRIAQMTGQAFGEPYFNGLLRDTEAVFDSAPPIAAVLAVQALKGDAAGLDMLA 120
           DYVMPHD RIAQMTGQ FGEPYF+GLL+DT+AVFDSAPP AAVLAVQAL+G+AAGLDMLA
Sbjct: 61  DYVMPHDHRIAQMTGQVFGEPYFHGLLKDTDAVFDSAPPTAAVLAVQALRGEAAGLDMLA 120

Query: 121 AIQRAHYQQGRRISEVATLTELAQALGIEPAAFTTELERVEQDELANHIEASRELLNYVG 180
           AIQRAHYQQGRRISE ATL ELAQALGIE AAF+ EL+R+EQ+ELA+HIEASRELLNYVG
Sbjct: 121 AIQRAHYQQGRRISEPATLIELAQALGIEAAAFSAELQRIEQEELADHIEASRELLNYVG 180

Query: 181 GRGFPTFVLQRGDTLEVFDTGRWLGQPEEWASYLREETAAASSAAPSATAAASPPAQCDL 240
           GRGFPTFVLQRGDTLEV DTGRWLGQPE+WA+YLR+ET A+SS      +A     QCDL
Sbjct: 181 GRGFPTFVLQRGDTLEVLDTGRWLGQPEQWANYLRDETRASSSG-----SADKSLTQCDL 235

Query: 241 ETGRCD 246
           +TGRCD
Sbjct: 236 QTGRCD 241


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 662,973
Number of extensions: 24465
Number of successful extensions: 104
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 163
Effective length of database: 1,226,865
Effective search space: 199978995
Effective search space used: 199978995
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)