BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0031.p (360 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 731 0.0 gi|300312337|ref|YP_003776429.1| transcription regulator protein... 262 4e-71 gi|300311134|ref|YP_003775226.1| transcription regulator protein... 239 2e-64 gi|300312133|ref|YP_003776225.1| transcription regulator protein... 210 1e-55 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 130 2e-31 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 731 bits (1888), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/360 (96%), Positives = 357/360 (99%) Query: 1 MFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQF 60 MFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQF Sbjct: 113 MFADERVPIKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQF 172 Query: 61 LGHWALELGIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIG 120 LGHW+LELGIEQVLTTHGATQALDL+IRTMTQPGDTV+IDDPGYCNLIAMLRLAGLNVIG Sbjct: 173 LGHWSLELGIEQVLTTHGATQALDLVIRTMTQPGDTVLIDDPGYCNLIAMLRLAGLNVIG 232 Query: 121 VPRTPGGVDTDMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVE 180 VPRTPGGVDTD+LETLAR HHPKMFFTTSVLQNPTGTSYTPACAMRVLQ AER+GFWVVE Sbjct: 233 VPRTPGGVDTDVLETLARTHHPKMFFTTSVLQNPTGTSYTPACAMRVLQAAERHGFWVVE 292 Query: 181 DDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVL 240 DDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVL Sbjct: 293 DDIFRELGQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVL 352 Query: 241 TLTNSEINERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFS 300 TLTNSEINERLVHNVLTEGHHRRHVQTLNA LL+AQ+TLNAKL+EVGLTPFTAARGGMFS Sbjct: 353 TLTNSEINERLVHNVLTEGHHRRHVQTLNATLLSAQATLNAKLSEVGLTPFTAARGGMFS 412 Query: 301 WATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFLRGL 360 WATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPH+TSFRFNVGYADVPELFDFLRGL Sbjct: 413 WATIEGCELSAREIADRARQKGIWLAPGDFFHLSAPHQTSFRFNVGYADVPELFDFLRGL 472 >gi|300312337|ref|YP_003776429.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 469 Score = 262 bits (669), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 137/340 (40%), Positives = 202/340 (59%), Gaps = 3/340 (0%) Query: 9 IKAGCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWALEL 68 ++ G G+ P +WL+D L + ++++R+ GYG +GY PLRQ + L +E Sbjct: 107 LRLGDGFPPVEWLHDVRLDKFHQKVVRTGIGALFGYGSRFGYLPLRQHLVHKLAQHGIEA 166 Query: 69 GIEQVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPGGV 128 G Q++ THGA QALD++IR +PGD V++D+PGY L L+L+G +IG+PR P G Sbjct: 167 GTGQIVLTHGANQALDIVIRHFIRPGDRVLVDEPGYYMLYGKLKLSGARIIGIPRLPDGP 226 Query: 129 DTDMLE-TLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFREL 187 D +LE L R P +FFT S+ NPT + +P A R+LQ A+RY +VE+D F + Sbjct: 227 DVAVLERELHRPGKPPLFFTQSLAHNPTASDTSPHKAHRILQLADRYQAIIVENDAFADF 286 Query: 188 GQATDPMLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEI 247 AT P +A LD L+R +YVGS+SK+++ +LRVG+IAC R+LA + KM++ +++SE Sbjct: 287 KPATAPRIATLDQLRRTVYVGSFSKSVSAALRVGFIACHRDLASDLADIKMLVHMSSSEY 346 Query: 248 NERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATIEGC 307 ER + +L++GH RH L L A A+L +G F A + M+ WA Sbjct: 347 CERTLDVILSDGHFSRHTARLRERLAQATEQARAQLEGLGAELFCAPQQAMYLWARFPWF 406 Query: 308 ELSAREIADRARQKGIWLAPGDFFHLSAPHKTSF-RFNVG 346 E A+ +A R Q+ I LAPG FH+ + RFNVG Sbjct: 407 E-DAKRLAQRLMQRQIVLAPGSIFHVDTEQTQPWSRFNVG 445 >gi|300311134|ref|YP_003775226.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 500 Score = 239 bits (611), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 137/350 (39%), Positives = 194/350 (55%), Gaps = 7/350 (2%) Query: 12 GCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWALELGIE 71 G G LP WL+ E + A R + R +GYG P G+ PLRQ + L + E Sbjct: 148 GGGLLPPDWLDGELIANALRAVSRDNPQLLLGYGTPQGFLPLRQQLQLKLAELEIAAAPE 207 Query: 72 QVLTTHGATQALDLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTD 131 Q++ T G TQ LD + R +PGD + +DDP + + G V+G+PR G D Sbjct: 208 QIVLTTGVTQGLDTVARHFLRPGDVIFVDDPAWFLMFGSFAALGAKVVGIPRLGDGPDIA 267 Query: 132 MLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFREL--GQ 189 L LA +H PK++ SVL NPT TS + A A +VL+ AE + F +VEDDI+ ++ G Sbjct: 268 RLRELAAVHKPKLYVINSVLHNPTSTSLSAAKAFQVLRIAEEHDFVIVEDDIYCDMHPGS 327 Query: 190 ATDPM--LAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEI 247 A P +AALD LQRVIY+G +SKT++ +LRVGYIA ELAR + K++ TLT EI Sbjct: 328 AVQPATRIAALDQLQRVIYLGGFSKTLSANLRVGYIATSAELARSLADRKLLSTLTTGEI 387 Query: 248 NERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATIEGC 307 ER+ + VL+EGH+R+H + + A L A+ + +L +G+ A GMF W G Sbjct: 388 GERVAYKVLSEGHYRKHAERVRARLNGARDKVMRQLERLGMDVVEAPPCGMFLWVDT-GR 446 Query: 308 ELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVPELFDFL 357 + + + + A Q+G LAPG F + T R NV P ++ FL Sbjct: 447 DTNV--MTEAAMQEGFLLAPGSLFSPAQLPSTYMRINVASMADPGIWRFL 494 >gi|300312133|ref|YP_003776225.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 491 Score = 210 bits (535), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 124/343 (36%), Positives = 188/343 (54%), Gaps = 6/343 (1%) Query: 12 GCGWLPGKWLNDEGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWALELGIE 71 G G LP +W+N L A R + RS GYG GY PLRQ + + L +++ Sbjct: 133 GSGDLPAEWINVPQLAAALRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGVDVTPP 192 Query: 72 QVLTTHGATQALDLIIRT-MTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDT 130 QVLTT GAT A++LI+ + + QPG TV++DDPG L+ L +G++++GV R G D Sbjct: 193 QVLTTLGATDAINLIVMSYLRQPGMTVLVDDPGSFLLMERLLASGMHIVGVARDADGPDI 252 Query: 131 DMLETLARLHHPKMFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFRELGQA 190 L+ H P +F S+L +P T +P A ++L+ AER+ F +VEDD + +L A Sbjct: 253 TALQNACEQHGPTFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPA 312 Query: 191 TDP----MLAALDGLQRVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSE 246 LA+LD LQ V+YVGS+SKT+ +R G+IA + ++ K+V +N Sbjct: 313 HRSPHATRLASLDQLQHVLYVGSFSKTLGAGMRAGFIAGNPQQIEWLLLYKLVSRASNGS 372 Query: 247 INERLVHNVLTEGHHRRHVQTLNAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATIEG 306 + ER ++ +L+EG +RRH + L L A+ L A L +G+ G++ W + G Sbjct: 373 LAERAIYRLLSEGGYRRHCEQLRTRLDQARPRLMAALEALGIVLPHRPDAGLYLWGKLPG 432 Query: 307 CELSAREIADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYAD 349 +L+A E+A+R G APG F ++ RFNV +D Sbjct: 433 -DLNAMEVAERMLANGYLTAPGPVFSSGQAARSYMRFNVASSD 474 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 130 bits (327), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 87/337 (25%), Positives = 150/337 (44%), Gaps = 19/337 (5%) Query: 24 EGLHQAERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWALELGIEQVLTTHGATQAL 83 E + A R++ G + YG GY PLR+ I L ++ EQVL G+ Q L Sbjct: 53 EHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISAEQVLMVSGSQQGL 112 Query: 84 DLIIRTMTQPGDTVMIDDPGYCNLIAMLRLAGLNVIGVPRTPGGVDTDMLETLARLHHPK 143 DL+ + + G V+++ P Y + L G VP G+ + +E +A + Sbjct: 113 DLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVPSDEFGLQPETIEAIA--GGAR 170 Query: 144 MFFTTSVLQNPTGTSYTPACAMRVLQTAERYGFWVVEDDIFRELGQATDPMLAALD-GLQ 202 M ++ QNPTG + ++++T R G ++EDD + L P+ L Sbjct: 171 MLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALSYQNAPLPKMLSMNPS 230 Query: 203 RVIYVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHR 262 VIY+GS+SK + P +R+GY+ R L ++ K L +++ + +V+ + +G Sbjct: 231 GVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQLTQMVVYEAIKDGFLD 290 Query: 263 RHVQTL--------NAMLLNAQSTLNAKLTEVGLTPFTAARGGMFSWATIEGCELSAREI 314 +HV T+ AML Q A + ++ GGMF W T+ + + Sbjct: 291 QHVPTIRKLYGDQCQAMLDALQQYFPASCS------WSKPEGGMFIWVTLPEHIDAGALL 344 Query: 315 ADRARQKGIWLAPGDFFHLSAPHKTSFRFNVGYADVP 351 + Q+ + PG F+ + K + R + + VP Sbjct: 345 NEAVEQEKVAFVPGAPFYANVAQKNTLRLS--FVTVP 379 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.323 0.138 0.427 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,214,003 Number of extensions: 50958 Number of successful extensions: 171 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 151 Number of HSP's successfully gapped: 11 Length of query: 360 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 274 Effective length of database: 1,212,660 Effective search space: 332268840 Effective search space used: 332268840 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)