BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0025.p (185 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC t... 277 5e-76 gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPa... 149 9e-38 gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPa... 147 6e-37 gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC t... 129 1e-31 gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [He... 129 1e-31 >gi|300313935|ref|YP_003778027.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 234 Score = 277 bits (708), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 134/139 (96%), Positives = 137/139 (98%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGRVL 60 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPP QGRVL Sbjct: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPVQGRVL 60 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLDEVYTIFPRL 120 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGL+E+Y IFPRL Sbjct: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTMAARKESAWGLEEIYAIFPRL 120 Query: 121 KERRRNGGGQLSGGEQQML 139 KERR+NGGGQLSGGEQQML Sbjct: 121 KERRKNGGGQLSGGEQQML 139 >gi|300312951|ref|YP_003777043.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 236 Score = 149 bits (377), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 81/142 (57%), Positives = 103/142 (72%), Gaps = 4/142 (2%) Query: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGRVLF 61 +L+VE + G YG S +L G+ +QV GEVVTLLGRNG GKTTTL++I+G+ P G V F Sbjct: 4 LLEVEGLTGGYGASQVLFGIDMQVREGEVVTLLGRNGMGKTTTLRTILGLNRPTGGVVRF 63 Query: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLT-MAAR---KESAWGLDEVYTIF 117 G+ I + IA RG+ +VPE R IFK L+VEENL+ AAR +++ W L+++Y F Sbjct: 64 RGEAIHSASADAIARRGMAIVPEGRQIFKNLSVEENLSAFAARRNGRDNPWTLEKIYQQF 123 Query: 118 PRLKERRRNGGGQLSGGEQQML 139 PRLKERR NGGGQLSGGEQQML Sbjct: 124 PRLKERRHNGGGQLSGGEQQML 145 >gi|300314072|ref|YP_003778164.1| amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 242 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 73/142 (51%), Positives = 98/142 (69%), Gaps = 3/142 (2%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGRVL 60 ++LQ+ D+ +YG+SHIL V+L V GEVVTLLGRNGAG+TTTL+SI+G+V +G + Sbjct: 10 LVLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIK 69 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM---AARKESAWGLDEVYTIF 117 GQ L ++KIA GV PE RGIF L+ EENL + ++ + +DE+Y +F Sbjct: 70 INGQETINLATHKIAHHGVGYCPEERGIFSSLSAEENLMLPPFVSKTDKGMSIDEIYEMF 129 Query: 118 PRLKERRRNGGGQLSGGEQQML 139 P LKERR + G +LSGGEQQML Sbjct: 130 PNLKERRNSQGTRLSGGEQQML 151 >gi|300310995|ref|YP_003775087.1| branched-chain amino acid ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 235 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 70/143 (48%), Positives = 94/143 (65%), Gaps = 4/143 (2%) Query: 1 MILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGRVL 60 M+LQ + VH +YG L GVSL V+ GE+VTL+G NGAGKTT L ++ G + GRV+ Sbjct: 1 MMLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVI 60 Query: 61 FEGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENLTM----AARKESAWGLDEVYTI 116 FEGQ I+ L +++I RG+ + PE R +F LTV ENL M A+ + G++ V+ + Sbjct: 61 FEGQDITQLQTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEAIEQGIEYVFGL 120 Query: 117 FPRLKERRRNGGGQLSGGEQQML 139 FPRLKER G +SGGEQQML Sbjct: 121 FPRLKERAAQRAGTMSGGEQQML 143 >gi|300313999|ref|YP_003778091.1| urea ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 232 Score = 129 bits (325), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 71/143 (49%), Positives = 97/143 (67%), Gaps = 6/143 (4%) Query: 2 ILQVEDVHGYYGKSHILQGVSLQVDAGEVVTLLGRNGAGKTTTLKSIVGVVPPAQGRVLF 61 +LQV +++ YYG +H L+GVSL V G+V++LLGRNG GKTT LK ++GV+P A+G V+F Sbjct: 1 MLQVNELNQYYGAAHTLRGVSLDVQKGKVLSLLGRNGVGKTTLLKCLMGVLPVAKGNVMF 60 Query: 62 EGQLISGLPSYKIAARGVCLVPEHRGIFKLLTVEENL-----TMAARKESAWGLDEVYTI 116 EG I+ L ++ A G+ VP+ R IF LTVEEN+ T++ R+ S+ EVY + Sbjct: 61 EGHDITKLKPHQRAKLGIAYVPQGREIFARLTVEENMLMGMATLSGRRASSIK-GEVYEL 119 Query: 117 FPRLKERRRNGGGQLSGGEQQML 139 FP LKE GG LSGG+QQ L Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQL 142 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.319 0.135 0.424 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 629,222 Number of extensions: 26793 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 62 Number of HSP's gapped: 272 Number of HSP's successfully gapped: 62 Length of query: 185 Length of database: 1,619,870 Length adjustment: 80 Effective length of query: 105 Effective length of database: 1,241,070 Effective search space: 130312350 Effective search space used: 130312350 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)