BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0022.p (370 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 585 e-168 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 261 5e-71 gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis tra... 231 1e-61 gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis pro... 227 1e-60 gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis pro... 221 8e-59 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 585 bits (1509), Expect = e-168, Method: Compositional matrix adjust. Identities = 287/321 (89%), Positives = 306/321 (95%) Query: 1 MKNLKIGVRLAIGFIALLMLMAVMVGLGVWRLGNIGDATDEMTQIALKKERDAVQWHAAI 60 MKNLKIGVRLAIGFIALLMLMAVMV LGVWRLG+IGDATD+MT+IALKKERDAVQWHAAI Sbjct: 1 MKNLKIGVRLAIGFIALLMLMAVMVALGVWRLGSIGDATDDMTRIALKKERDAVQWHAAI 60 Query: 61 KENGVRTFAVMKSDDDAFQQYFQKQIDAQSAKISQLQKQVEAAITDPEEKRLFTEVGKLR 120 KENGVRTFAVMKSDDDAFQ YFQKQIDAQSA+ISQLQK+VEAAITD EEKRLF EVGKLR Sbjct: 61 KENGVRTFAVMKSDDDAFQAYFQKQIDAQSARISQLQKEVEAAITDAEEKRLFDEVGKLR 120 Query: 121 AAYRDTRQKIFDIKTAGDDARAREMTDTTLVKMMDEYADSVLRYADYQKKVIDQTASEIN 180 AAYR TRQ IFD+KTAGDDARAREMTDTTLVKMMD+YAD VLRYAD+QK+VIDQTA+ IN Sbjct: 121 AAYRATRQSIFDVKTAGDDARAREMTDTTLVKMMDDYADGVLRYADFQKQVIDQTAAAIN 180 Query: 181 GDYRSGRSMLLMLGALEIVLGAALAWLLTRSITRPLNQAVSIAETVAAGDLTSRIEANSR 240 DYRSGRSMLL LGA+EIVLGAALAWLLTRSITRPLNQAV+IAETVAAGDLTSRI+++SR Sbjct: 181 RDYRSGRSMLLALGAIEIVLGAALAWLLTRSITRPLNQAVTIAETVAAGDLTSRIDSSSR 240 Query: 241 DETGQLLAALKSMNGNLQDIVGRVRSGTETINVASREIATGNLDLSARTEQQAGSLEETA 300 DETG+LLAALK+MNGNL DIVGRVR GTETIN ASREIATGNLDLSARTE QAGSLEETA Sbjct: 241 DETGKLLAALKTMNGNLLDIVGRVRMGTETINTASREIATGNLDLSARTEAQAGSLEETA 300 Query: 301 SAMEQLTSTVKQNADNARPSS 321 SAMEQLTSTVKQNADNAR ++ Sbjct: 301 SAMEQLTSTVKQNADNARQAN 321 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 261 bits (668), Expect = 5e-71, Method: Compositional matrix adjust. Identities = 150/322 (46%), Positives = 204/322 (63%) Query: 1 MKNLKIGVRLAIGFIALLMLMAVMVGLGVWRLGNIGDATDEMTQIALKKERDAVQWHAAI 60 + N+ IG RL +GF +L ++ G+G+WRL ++ AT EM LK ER W+ + Sbjct: 4 IGNMNIGRRLTLGFALILTFSIIIAGIGLWRLDHVAQATREMMAEPLKTERLMADWYTNL 63 Query: 61 KENGVRTFAVMKSDDDAFQQYFQKQIDAQSAKISQLQKQVEAAITDPEEKRLFTEVGKLR 120 RT A+ KS D A YF ++ A S + QKQVEA ++ PEEK LF ++G+LR Sbjct: 64 VAGIRRTIAIAKSSDPALGPYFAAEVAASSKSSGEYQKQVEALLSTPEEKALFQKIGELR 123 Query: 121 AAYRDTRQKIFDIKTAGDDARAREMTDTTLVKMMDEYADSVLRYADYQKKVIDQTASEIN 180 Y +R +I K AG+ A + D V Y D++ + D+Q+K +D TA EI+ Sbjct: 124 KLYLSSRDEINKAKAAGNTEEAMRILDQVFVPNATAYQDTMRKLVDFQRKEMDDTAREID 183 Query: 181 GDYRSGRSMLLMLGALEIVLGAALAWLLTRSITRPLNQAVSIAETVAAGDLTSRIEANSR 240 R+++L+L L ++LG A LT IT+PL++AV ++ VA GDL+S I SR Sbjct: 184 AIAAKSRTLILVLEGLILLLGIVFARYLTLGITKPLHRAVDVSRCVAEGDLSSEIAVTSR 243 Query: 241 DETGQLLAALKSMNGNLQDIVGRVRSGTETINVASREIATGNLDLSARTEQQAGSLEETA 300 DETGQLL +LK MN +L+ IV VRSGT+TI+ AS EIA GNLDLS+RTEQQA SL ETA Sbjct: 244 DETGQLLQSLKDMNQSLRGIVSNVRSGTDTISTASSEIAAGNLDLSSRTEQQASSLAETA 303 Query: 301 SAMEQLTSTVKQNADNARPSSR 322 SAME+L STV+QNADNAR +S+ Sbjct: 304 SAMEELISTVRQNADNARQASQ 325 >gi|300310668|ref|YP_003774760.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 515 Score = 231 bits (588), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 126/321 (39%), Positives = 198/321 (61%) Query: 1 MKNLKIGVRLAIGFIALLMLMAVMVGLGVWRLGNIGDATDEMTQIALKKERDAVQWHAAI 60 +K+++IG RL GF +L+ V+ +G+WRL + T +M + LK ER QW+ + Sbjct: 2 IKDIRIGSRLGAGFAVVLVFSMVVAAVGIWRLKTVAVQTQQMMDVPLKTERLVSQWNTLL 61 Query: 61 KENGVRTFAVMKSDDDAFQQYFQKQIDAQSAKISQLQKQVEAAITDPEEKRLFTEVGKLR 120 RT V+KS D + + K+ A S + +Q K VE + EEK++F + R Sbjct: 62 LIAIQRTTTVVKSHDPELEAFLAKEAAASSKESAQTLKDVEQLLASEEEKKMFAAINVAR 121 Query: 121 AAYRDTRQKIFDIKTAGDDARAREMTDTTLVKMMDEYADSVLRYADYQKKVIDQTASEIN 180 + R +I+ K GD A+ E+ V + D++ D+++ IDQ +++I Sbjct: 122 KQFLTIRDQIYAAKKQGDAAQVEELYQKQYVGIAKSTQDAMRALLDFERARIDQISAQIQ 181 Query: 181 GDYRSGRSMLLMLGALEIVLGAALAWLLTRSITRPLNQAVSIAETVAAGDLTSRIEANSR 240 D S + +++L + ++ G A A LLTRSITRP++ A++I++ VAAGDLTSR +A R Sbjct: 182 QDASSSQHQIMLLEVVILLCGIAFAVLLTRSITRPVHVALAISQRVAAGDLTSRAQAMGR 241 Query: 241 DETGQLLAALKSMNGNLQDIVGRVRSGTETINVASREIATGNLDLSARTEQQAGSLEETA 300 DE GQL+A+L+ M+ L +V VR G ++I +AS EIA GNLDLSARTE+QAG+LE+TA Sbjct: 242 DELGQLVASLQGMSERLHGVVSTVRHGADSIAMASGEIANGNLDLSARTEEQAGALEQTA 301 Query: 301 SAMEQLTSTVKQNADNARPSS 321 +++E+LTS+V+ N+DNA ++ Sbjct: 302 ASIEELTSSVRTNSDNAHQAN 322 >gi|300310594|ref|YP_003774686.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 541 Score = 227 bits (578), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 152/323 (47%), Positives = 197/323 (60%), Gaps = 3/323 (0%) Query: 3 NLKIGVRLAIGFIALLMLMAVMVGLGVWRLGNIGDATDEMTQIALKKERDAVQWHAAIKE 62 N+KIG RLA+GF +L +V+V L +WRL I ATDEM L KER W+ I Sbjct: 6 NMKIGRRLALGFAVILAAASVVVALSIWRLQGIAAATDEMMHEPLTKERLVSDWYRTIHT 65 Query: 63 NGVRTFAVMKSDDDAFQQYFQKQIDAQSAKISQLQKQVEAAITDPEEKRLFTEVGKLRAA 122 + RT A+ KS D + +F A S ++ QK +EA I +EK +FT++G++R Sbjct: 66 SVRRTTAIAKSSDPSLAAFFADDAAAASRMSTEQQKAIEALIESDQEKAVFTKLGEVRKD 125 Query: 123 YRDTRQKIFDIKTAGDDARAREMTDTTLVKMMDEYADSVLRYADYQKKVIDQTASEINGD 182 Y R I K G A ++ Y D + + Q+ IDQ A+ I Sbjct: 126 YIKYRDAISKAKAEGRTEEAAQILAGPFDVAGKGYLDLLQQLLTLQRANIDQVAAHIQTV 185 Query: 183 YRSGRSMLLMLGALEIVLGAALAWLLTRSITRPLNQAVSIAETVAAGDLTSRIE---ANS 239 YR R+++L L L++VLG A L ITRPL QAV +AE VAAGDLT RI+ A Sbjct: 186 YRESRNLMLALAFLQVVLGWLFARTLALGITRPLEQAVEVAEAVAAGDLTHRIDERLAAR 245 Query: 240 RDETGQLLAALKSMNGNLQDIVGRVRSGTETINVASREIATGNLDLSARTEQQAGSLEET 299 DETG+L+ AL +M GNL IVG+VR GT+ I AS+EIATGNLDLSARTE+QAG+LEET Sbjct: 246 GDETGKLMHALHAMTGNLARIVGQVRGGTDAIATASKEIATGNLDLSARTERQAGALEET 305 Query: 300 ASAMEQLTSTVKQNADNARPSSR 322 ASAME+LTSTV QNADNAR +++ Sbjct: 306 ASAMEELTSTVSQNADNARQANQ 328 >gi|300310693|ref|YP_003774785.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 576 Score = 221 bits (562), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 142/322 (44%), Positives = 203/322 (63%), Gaps = 8/322 (2%) Query: 1 MKNLKIGVRLAIGFIALLMLMAVMVGLGVWRLGNIGDATDEMTQIALKKERDAVQWHAAI 60 + ++KI VRL F AL+++M V+ G+GV L + DATDE+ K Q + Sbjct: 4 ISDMKISVRLGACFAALIVVMCVIAGVGVKNLLMVSDATDEIVNDRYVKVALGTQITDKV 63 Query: 61 KENGVRTF--AVMKSDDDAFQQYFQKQIDAQSAKISQLQKQVEAAITDPEEKRLFTEVGK 118 G R+ A+M + + ++Y + +D ++++S+ ++E P L + + Sbjct: 64 N-TGARSLRNAIMARNPEEQKKYLDR-MDTYTSQVSEHLAEMEKRTNTPRGSELLAALKQ 121 Query: 119 LRAAYRDTRQKIFDI--KTAGDDARAREMTDTTLVKMMDEYADSVLRYADYQKKVIDQTA 176 RA Y R K+ D+ + D+A A + D T + + D+Y +V +Q ++D++A Sbjct: 122 ARADYSKERIKVVDLIHQQKRDEATAH-LFDKT-IPVQDKYFAAVKEMVSFQSSLMDKSA 179 Query: 177 SEINGDYRSGRSMLLMLGALEIVLGAALAWLLTRSITRPLNQAVSIAETVAAGDLTSRIE 236 + S +++L+L + ++L A A L+TRSITRPLN+AV +A VAAGDLT +IE Sbjct: 180 ERASAASSSAINIMLVLSGVAVLLSALCAMLITRSITRPLNEAVQVATAVAAGDLTVQIE 239 Query: 237 ANSRDETGQLLAALKSMNGNLQDIVGRVRSGTETINVASREIATGNLDLSARTEQQAGSL 296 A S+DETG LL ALKSMN NL IV VR+GT+TIN ASREIATGNLDLS+RTEQQAG+L Sbjct: 240 ATSKDETGALLGALKSMNDNLHRIVAEVRAGTDTINTASREIATGNLDLSSRTEQQAGAL 299 Query: 297 EETASAMEQLTSTVKQNADNAR 318 EETASAME+LTSTV+QNADNAR Sbjct: 300 EETASAMEELTSTVRQNADNAR 321 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.128 0.369 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 825,273 Number of extensions: 29897 Number of successful extensions: 379 Number of sequences better than 1.0e-08: 65 Number of HSP's gapped: 325 Number of HSP's successfully gapped: 65 Length of query: 370 Length of database: 1,619,870 Length adjustment: 87 Effective length of query: 283 Effective length of database: 1,207,925 Effective search space: 341842775 Effective search space used: 341842775 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)