BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0033.0021.p (164 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis tra... 253 8e-69 gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis tra... 210 4e-56 gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis pro... 204 3e-54 gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis tra... 203 6e-54 gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis tra... 202 1e-53 >gi|300313938|ref|YP_003778030.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 533 Score = 253 bits (645), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 142/152 (93%), Positives = 147/152 (96%) Query: 1 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 60 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLI DSVE Sbjct: 361 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIDDSVE 420 Query: 61 KVGDGSRLVAQAGDTMQEVVHSVARVTEIVREITLASQEQSDGIEQVNLAITHIDEATQQ 120 KV DGSRLVA+AGDTMQEVV SVARVT +VREITLASQEQSDGIEQVNLAITHIDE TQQ Sbjct: 421 KVDDGSRLVARAGDTMQEVVQSVARVTAVVREITLASQEQSDGIEQVNLAITHIDETTQQ 480 Query: 121 NAALVEEAAAAARSMQDQAASLTEAVSVFRLD 152 NAALVE+AAAAARSMQDQAASLT+AVSVFRL+ Sbjct: 481 NAALVEQAAAAARSMQDQAASLTDAVSVFRLE 512 >gi|300312336|ref|YP_003776428.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 536 Score = 210 bits (535), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 123/151 (81%), Positives = 133/151 (88%) Query: 1 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 60 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSASAAKEIK+LI DSV Sbjct: 364 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELINDSVG 423 Query: 61 KVGDGSRLVAQAGDTMQEVVHSVARVTEIVREITLASQEQSDGIEQVNLAITHIDEATQQ 120 KV DGSRLV QAG+TMQEVV SV RVT+IV EI+ AS EQ+ GIEQ+NLAIT +D+ TQQ Sbjct: 424 KVDDGSRLVEQAGNTMQEVVSSVRRVTDIVAEISAASTEQTHGIEQINLAITQMDQVTQQ 483 Query: 121 NAALVEEAAAAARSMQDQAASLTEAVSVFRL 151 NAALVEEAAAAA SMQ QA L + VSVFRL Sbjct: 484 NAALVEEAAAAAASMQTQAGRLMQMVSVFRL 514 >gi|300309796|ref|YP_003773888.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 204 bits (519), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 119/154 (77%), Positives = 134/154 (87%) Query: 1 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 60 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIK LIGDSV Sbjct: 370 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKVLIGDSVG 429 Query: 61 KVGDGSRLVAQAGDTMQEVVHSVARVTEIVREITLASQEQSDGIEQVNLAITHIDEATQQ 120 KV +GS+LV QAG TM ++V S+ RVT+++ EI A++EQS GIEQVN AI ID+ TQQ Sbjct: 430 KVENGSKLVEQAGSTMHDIVTSIRRVTDVMTEINHANREQSSGIEQVNEAIIQIDDMTQQ 489 Query: 121 NAALVEEAAAAARSMQDQAASLTEAVSVFRLDTA 154 NAALVE+AAAAARS+Q+QAA L + VSVFRLD A Sbjct: 490 NAALVEQAAAAARSLQEQAAGLQQLVSVFRLDAA 523 >gi|300312220|ref|YP_003776312.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 535 Score = 203 bits (516), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 118/152 (77%), Positives = 137/152 (90%) Query: 1 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 60 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA+EIK+LI DSVE Sbjct: 359 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVE 418 Query: 61 KVGDGSRLVAQAGDTMQEVVHSVARVTEIVREITLASQEQSDGIEQVNLAITHIDEATQQ 120 KV GSRLV QAG+TM++VV SV RV++IVR+I++AS EQSDGI QVN AI +D+ TQQ Sbjct: 419 KVQSGSRLVMQAGNTMEQVVTSVQRVSDIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQ 478 Query: 121 NAALVEEAAAAARSMQDQAASLTEAVSVFRLD 152 NAALVEEAAAA++S+++QA L +AVSVFRL+ Sbjct: 479 NAALVEEAAAASQSLREQAKGLAQAVSVFRLE 510 >gi|300312219|ref|YP_003776311.1| methyl-accepting chemotaxis transducer transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 563 Score = 202 bits (513), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 121/160 (75%), Positives = 139/160 (86%), Gaps = 2/160 (1%) Query: 1 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKQLIGDSVE 60 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA+EIK+LI DSV Sbjct: 387 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAREIKELIDDSVN 446 Query: 61 KVGDGSRLVAQAGDTMQEVVHSVARVTEIVREITLASQEQSDGIEQVNLAITHIDEATQQ 120 KV GSRLV QAG TM+EVV SV RV+ IVR+I++AS EQSDGI QVN AI +D+ TQQ Sbjct: 447 KVQSGSRLVLQAGSTMEEVVTSVRRVSGIVRDISVASGEQSDGIAQVNQAIGMMDQTTQQ 506 Query: 121 NAALVEEAAAAARSMQDQAASLTEAVSVFRLDTALVADAP 160 NAALVEEAAAA++S+++QA L +AVSVFRL+ + A+AP Sbjct: 507 NAALVEEAAAASQSLREQAKGLAQAVSVFRLERS--AEAP 544 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.312 0.123 0.308 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 295,952 Number of extensions: 7441 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 70 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 70 Length of query: 164 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 86 Effective length of database: 1,250,540 Effective search space: 107546440 Effective search space used: 107546440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 127 (53.5 bits)