BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0033.0019.p
         (307 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313940|ref|YP_003778032.1| transcription factor jumonji, J...   529   e-151

>gi|300313940|ref|YP_003778032.1| transcription factor jumonji, JmjC
           protein [Herbaspirillum seropedicae SmR1]
          Length = 296

 Score =  529 bits (1363), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 255/292 (87%), Positives = 275/292 (94%), Gaps = 1/292 (0%)

Query: 16  HPAARSLPPRPDVSGLSAEEAAARKAARDQRDAQVRGVSSVAEMREAIRAASAILPVVHE 75
           HPA R LPPRPD++ LS E+AAARK ARDQRDA++RGV+SVAEMR+AIRAASA LP +  
Sbjct: 6   HPA-RPLPPRPDLAKLSQEQAAARKLARDQRDARIRGVASVAEMRQAIRAASAGLPALAA 64

Query: 76  IARIGPQKTAAFRERARAGLPFIMTGMAGRWPLSAMSVQALREHFGQLPVRARVGDYINT 135
           I R GP KTAAFR+RA AGLPF+M+GMA RWPL+AM++  LR+HFGQLPVRARVGDYINT
Sbjct: 65  IPRTGPLKTAAFRQRAAAGLPFLMSGMASRWPLAAMTLPDLRQHFGQLPVRARVGDYINT 124

Query: 136 AFAPDRAMQDMTLVDYLEQALADESGLPPYLGNLELRELNRLCHWPNFFEKMGPPRFWIG 195
           AFAPDRAMQDMTL+DYLE+A ADESGLPPYLGNLELRELNRLCHWPNFF+KMGPPRFWIG
Sbjct: 125 AFAPDRAMQDMTLLDYLERAAADESGLPPYLGNLELRELNRLCHWPNFFDKMGPPRFWIG 184

Query: 196 PAGCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPDLER 255
           PAGCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPDLER
Sbjct: 185 PAGCITPLHCDYDDNVFAQVWGSKRVWLAPPHHDQYLYPKEANAILFGSPFDPDHPDLER 244

Query: 256 FPLARRAALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRWARGRPLVLAA 307
           FPLAR+AALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRWARGRPLVL+A
Sbjct: 245 FPLARQAALVCCEVQPGEMLYIPAGWYHQVSSLTFSLSSNRWARGRPLVLSA 296


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,003,180
Number of extensions: 39855
Number of successful extensions: 133
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 133
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 222
Effective length of database: 1,217,395
Effective search space: 270261690
Effective search space used: 270261690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)